Transcription Factor
| Accessions: | SigD (DBTBS 1.0) |
| Names: | RNA polymerase sigma-D factor, RPSD_BACSU, SigD, Sigma-28 |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Uniprot: | P10726 |
| Length: | 254 |
| Pfam Domains: | 27-99 Sigma-70 region 2 106-168 Sigma-70 region 3 200-246 Sigma-70, region 4 |
| Sequence: (in bold interface residues) | 1 MQSLNYEDQVLWTRWKEWKDPKAGDDLMRRYMPLVTYHVGRISVGLPKSVHKDDLMSLGM 60 61 LGLYDALEKFDPSRDLKFDTYASFRIRGAIIDGLRKEDWLPRTSREKTKKVEAAIEKLEQ 120 121 RYLRNVSPAEIAEELGMTVQDVVSTMNEGFFANLLSIDEKLHDQDDGENIQVMIRDDKNV 180 181 PPEEKIMKDELIAQLAEKIHELSEKEQLVVSLFYKEELTLTEIGQVLNLSTSRISQIHSK 240 241 ALFKLKNLLEKVIQ |
| Interface Residues: | 84, 85, 220, 221, 230, 231, 232, 233, 235, 236, 238 |
| 3D-footprint Homologues: | 2voa_B, 3n97_A, 6jhe_A, 8cyf_B |
| Binding Motifs: | SigD_1 TwAA SigD_2 GCCGATAT |
| Binding Sites: | cheV degR_1 dltA_1 epr_2 flgB_2 hag_2 hemAT lytA_2 lytD lytF mcpA mcpB mcpC motA nfrA_2 sigA tlpA tlpB tlpC ybdO yfmT yjbJ yjcP yjfB ylqB yoaH yscB yvyC yvyF yxkC_1 |
| Related annotations: | PaperBLAST |
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