Transcription Factor
Accessions: | P92948 (JASPAR 2024) |
Names: | AtMYBCD5, Atypical R2R3-MYB transcription factor CDC5, Cdc5-like protein, CDC5L_ARATH, Cell division cycle 5-like protein, MAC protein 1, MOS4-associated complex protein 1, Protein MYB DOMAIN CELL DIVISION CYCLE 5 |
Organisms: | Arabidopsis thaliana |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | P92948 |
Length: | 844 |
Pfam Domains: | 8-53 Myb-like DNA-binding domain 10-70 Myb-like DNA-binding domain 60-103 Myb-like DNA-binding domain 62-107 Myb-like DNA-binding domain 338-729 pre-mRNA splicing factor component |
Sequence: (in bold interface residues) | 1 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT 60 61 EWTREEDEKLLHLAKLLPTQWRTIAPIVGRTPSQCLERYEKLLDAACTKDENYDAADDPR 120 121 KLRPGEIDPNPEAKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR 180 181 LASLQKRRELKAAGIDGRHRKRKRKGIDYNAEIPFEKRAPAGFYDTADEDRPADQVKFPT 240 241 TIEELEGKRRADVEAHLRKQDVARNKIAQRQDAPAAILQANKLNDPEVVRKRSKLMLPPP 300 301 QISDHELEEIAKMGYASDLLAENEELTEGSAATRALLANYSQTPRQGMTPMRTPQRTPAG 360 361 KGDAIMMEAENLARLRDSQTPLLGGENPELHPSDFTGVTPRKKEIQTPNPMLTPSMTPGG 420 421 AGLTPRIGLTPSRDGSSFSMTPKGTPFRDELHINEDMDMHESAKLERQRREEARRSLRSG 480 481 LTGLPQPKNEYQIVAQPPPEESEEPEEKIEEDMSDRIAREKAEEEARQQALLKKRSKVLQ 540 541 RDLPRPPAASLAVIRNSLLSADGDKSSVVPPTPIEVADKMVREELLQLLEHDNAKYPLDD 600 601 KAEKKKGAKNRTNRSASQVLAIDDFDENELQEADKMIKEEGKFLCVSMGHENKTLDDFVE 660 661 AHNTCVNDLMYFPTRSAYELSSVAGNADKVAAFQEEMENVRKKMEEDEKKAEHMKAKYKT 720 721 YTKGHERRAETVWTQIEATLKQAEIGGTEVECFKALKRQEEMAASFRKKNLQEEVIKQKE 780 781 TESKLQTRYGNMLAMVEKAEEIMVGFRAQALKKQEDVEDSHKLKEAKLATGEEEDIAIAM 840 841 EASA |
Interface Residues: | 7, 41, 42, 43, 44, 46, 47, 50, 51, 52, 92, 93, 96, 97, 100, 101, 102 |
3D-footprint Homologues: | 1w0t_A, 2kdz_A, 1vfc_A, 3osg_A, 7c4r_A, 3zqc_A, 6kks_A, 1mse_C, 7xur_A, 5eyb_B |
Binding Motifs: | MA0579.1 rsCTCAGCGsg MA0579.2 sCTCAGCGs |
Publications: | Hirayama T., Shinozaki K. A cdc5+ homolog of a higher plant, Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 93:13371-13376 (1996). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.