Transcription Factor

Accessions: P92948 (JASPAR 2024)
Names: AtMYBCD5, Atypical R2R3-MYB transcription factor CDC5, Cdc5-like protein, CDC5L_ARATH, Cell division cycle 5-like protein, MAC protein 1, MOS4-associated complex protein 1, Protein MYB DOMAIN CELL DIVISION CYCLE 5
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: P92948
Length: 844
Pfam Domains: 8-53 Myb-like DNA-binding domain
10-70 Myb-like DNA-binding domain
60-103 Myb-like DNA-binding domain
62-107 Myb-like DNA-binding domain
338-729 pre-mRNA splicing factor component
Sequence:
(in bold interface residues)
1 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT 60
61 EWTREEDEKLLHLAKLLPTQWRTIAPIVGRTPSQCLERYEKLLDAACTKDENYDAADDPR 120
121 KLRPGEIDPNPEAKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR 180
181 LASLQKRRELKAAGIDGRHRKRKRKGIDYNAEIPFEKRAPAGFYDTADEDRPADQVKFPT 240
241 TIEELEGKRRADVEAHLRKQDVARNKIAQRQDAPAAILQANKLNDPEVVRKRSKLMLPPP 300
301 QISDHELEEIAKMGYASDLLAENEELTEGSAATRALLANYSQTPRQGMTPMRTPQRTPAG 360
361 KGDAIMMEAENLARLRDSQTPLLGGENPELHPSDFTGVTPRKKEIQTPNPMLTPSMTPGG 420
421 AGLTPRIGLTPSRDGSSFSMTPKGTPFRDELHINEDMDMHESAKLERQRREEARRSLRSG 480
481 LTGLPQPKNEYQIVAQPPPEESEEPEEKIEEDMSDRIAREKAEEEARQQALLKKRSKVLQ 540
541 RDLPRPPAASLAVIRNSLLSADGDKSSVVPPTPIEVADKMVREELLQLLEHDNAKYPLDD 600
601 KAEKKKGAKNRTNRSASQVLAIDDFDENELQEADKMIKEEGKFLCVSMGHENKTLDDFVE 660
661 AHNTCVNDLMYFPTRSAYELSSVAGNADKVAAFQEEMENVRKKMEEDEKKAEHMKAKYKT 720
721 YTKGHERRAETVWTQIEATLKQAEIGGTEVECFKALKRQEEMAASFRKKNLQEEVIKQKE 780
781 TESKLQTRYGNMLAMVEKAEEIMVGFRAQALKKQEDVEDSHKLKEAKLATGEEEDIAIAM 840
841 EASA
Interface Residues: 7, 41, 42, 43, 44, 46, 47, 50, 51, 52, 92, 93, 96, 97, 100, 101, 102
3D-footprint Homologues: 1w0t_A, 2kdz_A, 1vfc_A, 3osg_A, 7c4r_A, 3zqc_A, 6kks_A, 1mse_C, 7xur_A, 5eyb_B
Binding Motifs: MA0579.1 rsCTCAGCGsg
MA0579.2 sCTCAGCGs
Publications: Hirayama T., Shinozaki K. A cdc5+ homolog of a higher plant, Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 93:13371-13376 (1996). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.