Transcription Factor
| Accessions: | Q9SVC5 (JASPAR 2024), T13163 (AthalianaCistrome v4_May2016) |
| Names: | AtDOF3.5, Dof zinc finger protein DOF3.5, DOF35_ARATH, AT3G52440, T13163; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-DOF |
| Length: | 247 |
| Pfam Domains: | 25-81 Dof domain, zinc finger |
| Sequence: (in bold interface residues) | 1 MERAEALTSSFIWRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWT 60 61 KGGSLRNVPVGGGCRKSRRPKSSSGNNTKTSLTANSGNPGGGSPSIDLALVYANFLNPKP 120 121 DESILQENCDLATTDFLVDNPTGTSMDPSWSMDINDGHHDHYINPVEHIVEECGYNGLPP 180 181 FPGEELLSLDTNGVWSDALLIGHNHVDVGVTPVQAVHEPVVHFADESNDSTNLLFGSWSP 240 241 FDFTADG |
| Interface Residues: | 11, 12, 14, 28, 38, 42, 81, 83, 84, 90, 96, 97, 147, 148 |
| 3D-footprint Homologues: | 3dfx_B, 5yuy_A |
| Binding Motifs: | M0272 / MA1276.1 sAwAAAGkdaa M0247 wwwttwmCTTTTTbyyttttt MA1276.2 AwAAAGk |
| Binding Sites: | MA1276.1.6 MA1276.1.12 MA1276.1.7 MA1276.1.16 MA1276.1.1 MA1276.1.10 MA1276.1.11 MA1276.1.13 MA1276.1.14 MA1276.1.15 MA1276.1.17 MA1276.1.18 MA1276.1.19 MA1276.1.2 MA1276.1.20 MA1276.1.3 MA1276.1.4 MA1276.1.5 MA1276.1.8 MA1276.1.9 MA1276.2.1 MA1276.2.10 MA1276.2.11 MA1276.2.12 MA1276.2.13 MA1276.2.14 MA1276.2.15 MA1276.2.16 MA1276.2.17 MA1276.2.18 MA1276.2.19 MA1276.2.2 MA1276.2.20 MA1276.2.3 MA1276.2.4 MA1276.2.5 MA1276.2.6 MA1276.2.7 MA1276.2.8 MA1276.2.9 |
| Publications: | Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed] |
| Related annotations: | PaperBLAST |
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