Transcription Factor

Accessions: Q9LY00 (JASPAR 2024), T11674 (AthalianaCistrome v4_May2016)
Names: Probable WRKY transcription factor 70, WRK70_ARATH, WRKY DNA-binding protein 70, AT3G56400, T11674;, WRKY70
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: DAP-seq, family:WRKY
Length: 294
Pfam Domains: 120-180 WRKY DNA -binding domain
Sequence:
(in bold interface residues)
1 MDTNKAKKLKVMNQLVEGHDLTTQLQQLLSQPGSGLEDLVAKILVCFNNTISVLDTFEPI 60
61 SSSSSLAAVEGSQNASCDNDGKFEDSGDSRKRLGPVKGKRGCYKRKKRSETCTIESTILE 120
121 DAFSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSITYIGNHTCN 180
181 TNAETPKSKTCDHHDEIFMDSEDHKSPSLSTSMKEEDNPHRHHGSSTENDLSLVWPEMVF 240
241 EEDYHHQASYVNGKTSTSIDVLGSQDLMVFGGGGDFEFSENEHFSIFSSCSNLS
Interface Residues: 126, 127, 128, 130, 131, 142, 191
3D-footprint Homologues: 6j4f_F, 6j4g_B, 6ir8_A, 6j4e_B, 7z0u_A, 4nih_A
Binding Motifs: M0810 / MA1308.1 rsCGTTGACTTTt
MA1308.2 CGTTGACTTT
Binding Sites: MA1308.1.13
MA1308.1.1 / MA1308.1.8
MA1308.1.14
MA1308.1.16
MA1308.1.20
MA1308.1.9
MA1308.1.10
MA1308.1.11
MA1308.1.12
MA1308.1.15
MA1308.1.17
MA1308.1.18
MA1308.1.19
MA1308.1.2
MA1308.1.3
MA1308.1.4
MA1308.1.5
MA1308.1.6
MA1308.1.7
MA1308.2.1 / MA1308.2.8
MA1308.2.10
MA1308.2.11
MA1308.2.12
MA1308.2.13
MA1308.2.14
MA1308.2.15
MA1308.2.16
MA1308.2.17
MA1308.2.18
MA1308.2.19
MA1308.2.2
MA1308.2.20
MA1308.2.3
MA1308.2.4
MA1308.2.5
MA1308.2.6
MA1308.2.7
MA1308.2.9
Publications: Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.