Transcription Factor

Accessions: UP00235A (UniPROBE 20160601), P31313 (JASPAR 2024)
Names: homeo box C11, Homeobox protein Hox-C11, Hox-3.7, Hoxc-11, Hoxc11, Homeobox protein Hox-3.7, HXC11_MOUSE
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: P31313
Description: homeo box C11
Length: 304
Pfam Domains: 42-178 Protein of unknown function (DUF3528)
233-289 Homeobox domain
Sequence:
(in bold interface residues)
1 MFNSVNLGNFCSPSRKERGADFGERGSCTSNLYLPSCTYYVPEFSTVSSFLPQAPSRQIS 60
61 YPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGS 120
121 YGGHHHPSAPHAAPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDAPAEPPCSGKGEAKGE 180
181 PEAPPASGLASRAEAGAEAEAEEENTNPSSSGSSHSATKEPAKGAAPNAPRTRKKRCPYS 240
241 KFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSG 300
301 NPLL
Interface Residues: 233, 234, 235, 236, 274, 275, 277, 278, 281, 282, 285, 286, 289
3D-footprint Homologues: 6a8r_A, 1fjl_B, 5zfz_A, 1ig7_A, 2h1k_B, 1puf_A, 3cmy_A, 3lnq_A, 1nk2_P, 1zq3_P, 2lkx_A, 2ld5_A, 2hdd_A, 2r5y_A, 1puf_B, 7psx_B, 5jlw_D, 2hos_A, 6es3_K, 4xrs_G, 7q3o_C, 1b72_A, 3rkq_B, 5flv_I, 3a01_E, 5zjt_E, 4cyc_A, 1jgg_B, 6m3d_C, 1e3o_C, 1au7_A, 2xsd_C, 1le8_A, 7xrc_C, 1mnm_C, 4qtr_D, 1k61_B, 1o4x_A, 6fqq_E, 1le8_B, 1du0_A, 5hod_A
Binding Motifs: UP00235A_1 yaarGTCGTAAAayrk
PH0067.1 ywrgGTCGTAAAwwywc
Binding Sites: TAATAAAA
AATAAAAT
ATCGTAAA
ATCGTTAA
ATTTACGA
ATTTTATG
CAATAAAA
CATAAAAC
CCATAAAA
CTCGTAAA
GTAATAAA
GTCATAAA
GTCATTAA
GTCGTTAA
GTTTACGA
TAATTAAA
TCATAAAA
TCATTAAA
TCGTAAAA
TCGTTAAA
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.