Transcription Factor

						

			
Accessions: RocR (DBTBS 1.0)

			
Names: RocR, ROCR_BACSU
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Uniprot: P38022
Length: 461
Pfam Domains:    16-123 PAS fold
   21-121 PAS domain
  143-308 Sigma-54 interaction domain
  166-302 AAA domain (dynein-related subfamily)
  415-455 Bacterial regulatory protein, Fis family
Sequence: 
(in bold interface residues)		   1 MVKDSEFLTLVFQSILDEIDVGLHVVDEHGNTIVYNNKMMQIEDMEKHDVLNKNLMDVFM   60
  61 FSKQQDSTLVQALQEGKTIKNVKQSYFNNKGQEITTINHTYPIVQDGKIRGAVEIAKDVT  120
 121 KLERLIRENMNKKGSTTYTFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELF  180
 181 AQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAFTGAVDQPGLFEQAHGGTLLL  240
 241 DEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLY  300
 301 YRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIR  360
 361 ELEHMIEGAMNFMTDEQTITASHLPYQYRMKIKPADIPEPETPRHQPAADLKEKMESFEK  420
 421 YVIENVLRKHGHNISKAAQELGISRQSLQYRLKKFSHSSNE
Interface Residues: 295, 296, 317, 444, 445, 446, 447, 449, 450, 453
3D-footprint Homologues: 7ssa_L, 4fth_A
Binding Motifs: RocR GCAAAAkmATTyTGC
Binding Sites: rocA_2 / rocG_1
rocA_3 / rocG_2
rocD_2
rocD_3
rocR_1
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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