Transcription Factor

Accessions: REL_HUMAN (HOCOMOCO 10), Q04864 (JASPAR 2024)
Names: REL_HUMAN
Organisms: Homo sapiens
Libraries: HOCOMOCO 10 1, JASPAR 2024 2
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 619
Pfam Domains: 10-178 Rel homology domain (RHD)
Sequence:
(in bold interface residues)
1 MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGK 60
61 VRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAII 120
121 TRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRA 180
181 PNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQV 240
241 AIVFKTPPYCKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLF 300
301 QKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGITVNFPERPRPGLLGSIGEGRYF 360
361 KKEPNLFSHDAVVREMPTGVSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTP 420
421 RSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSA 480
481 DLYGISDPNMLSNCSVNMMTTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMS 540
541 SSSMSAGANSNTTVFVSQSDAFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGI 600
601 GSMQNEQLSDSFPYEFFQV
Interface Residues: 22, 24, 25, 27, 28, 30, 31, 32, 179, 181, 210, 238
3D-footprint Homologues: 1nfk_A, 1a3q_A, 2o61_A, 1gji_A, 2ram_A, 1imh_C, 7cli_B
Binding Motifs: REL_HUMAN.H10MO.C|M01479 dkGGrmwTTCCm
MA0101.1 sGGrmwTTCC
Binding Sites: MA0101.1.1
MA0101.1.10
MA0101.1.11
MA0101.1.12
MA0101.1.13
MA0101.1.14
MA0101.1.15
MA0101.1.16
MA0101.1.17
MA0101.1.2
MA0101.1.3
MA0101.1.4
MA0101.1.5
MA0101.1.6
MA0101.1.7
MA0101.1.8
MA0101.1.9
Publications: Kunsch C., Ruben S. M., Rosen C. A. Selection of optimal kappaB/Rel DNA-binding motifs: interaction of both subunits of NF-kappaB with DNA is required for transcriptional activation. Mol. Cell. Biol. 12:4412-4421 (1992). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.