Transcription Factor

Accessions: T013113_1.02 (CISBP 1.02)
Names: hlh-16, T013113_1.02;
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:bHLH
Length: 146
Pfam Domains: 42-94 Helix-loop-helix DNA-binding domain
Sequence:
(in bold interface residues)
1 MSSESPPGAEEEFEPYVRRKRSEAGGRKKMQGLNEQEQNLLRNSINSRERRRMHELNDEF 60
61 ETLRECLPYPNEANSRRMSKANTLLLASNWIKQLANANHKLQMELNMANAKIDSLMVQLK 120
121 KVEKPSSKCSKCQQNVCFSVDCITST
Interface Residues: 19, 22, 25, 26, 42, 45, 46, 48, 49, 52, 53, 73, 74, 75, 77
3D-footprint Homologues: 1nwq_C, 7z5k_B, 5i50_B, 5eyo_A, 7d8t_A, 7f2f_B, 2ql2_D, 5gnj_I, 6g1l_A, 8e5d_A, 3g73_A
Binding Motifs: M0173_1.02 kkaCAATATkgta
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.