Transcription Factor
| Accessions: | HSFC1 (ArabidopsisPBM 20140210), T15276 (AthalianaCistrome v4_May2016), Q9LV52 (JASPAR 2024) |
| Names: | AT-HSFC1, AT3G24520, HSFC1, T15276;, AtHsf-08, AtHsfC1, Heat stress transcription factor C-1, HSFC1_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, AthalianaCistrome v4_May2016 2, JASPAR 2024 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | HSF, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:HSF |
| Length: | 330 |
| Pfam Domains: | 18-110 HSF-type DNA-binding 122-189 Interferon-induced 35 kDa protein (IFP 35) N-terminus |
| Sequence: (in bold interface residues) | 1 MEDDNSNNNNNNNVIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAY 60 61 FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHARGMYGQDLED 120 121 GEIVREIERLKEEQRELEAEIQRMNRRIEATEKRPEQMMAFLYKVVEDPDLLPRMMLEKE 180 181 RTKQQQQVSDKKKRRVTMSTVKSEEEEVEEDEGRVFRVMSSSTPSPSSTENLYRNHSPDG 240 241 WIVPMTQGQFGSYETGLVAKSMLSNSTSSTSSSLTSTFSLPESVNGGGGGGCGSIQGERR 300 301 YKETATFGGVVESNPPTTPPYPFSLFRGGF |
| Interface Residues: | 62, 63, 68, 70, 71, 72, 74, 75, 106 |
| 3D-footprint Homologues: | 5hdn_C, 3hts_B, 5d5v_B, 5d5w_B, 7dci_A, 6rrd_B |
| Binding Motifs: | HSFC1 yTTCTAGAAa HSFC1_2 vGAAgcTTCy M0451 / MA1667.1 CTAGAAgcTTC M0452 wkcTTCTAGAAgcTTCy MA1667.2 gyTTCyAGAArc MA1667.3 TTCyAGAA |
| Binding Sites: | MA1667.3.11 / MA1667.3.12 / MA1667.3.2 / MA1667.3.20 / MA1667.3.3 / MA1667.3.4 / MA1667.3.5 MA1667.3.18 / MA1667.3.6 / MA1667.3.7 / MA1667.3.9 MA1667.2.7 MA1667.2.8 MA1667.2.9 MA1667.2.2 MA1667.2.3 MA1667.2.4 MA1667.2.5 MA1667.2.6 MA1667.2.12 MA1667.2.11 / MA1667.2.20 MA1667.2.1 MA1667.2.10 MA1667.2.13 MA1667.2.14 MA1667.2.15 MA1667.2.16 MA1667.2.17 MA1667.2.18 MA1667.2.19 MA1667.3.19 MA1667.3.14 MA1667.3.17 MA1667.3.15 / MA1667.3.16 MA1667.3.1 MA1667.3.10 / MA1667.3.8 MA1667.3.13 |
| Publications: | Wu C. Heat shock transcription factors: structure and regulation. Annu Rev Cell Dev Biol : (1995;11:441-69.). [Pubmed] |
| Related annotations: | PaperBLAST |
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