Transcription Factor
| Accessions: | O22456 (JASPAR 2024) |
| Names: | Agamous-like MADS-box protein AGL9, Developmental protein SEPALLATA 3, SEP3_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 251 |
| Pfam Domains: | 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain) 93-175 K-box region |
| Sequence: (in bold interface residues) | 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60 61 SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120 121 GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQ 180 181 MPLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQDGMGAGPSVNNYM 240 241 LGWLPYDTNSI |
| Interface Residues: | 3, 4, 5, 15, 18, 19, 23 |
| 3D-footprint Homologues: | 1n6j_A, 1c7u_A, 7x1n_C, 1mnm_A, 1hbx_A |
| Binding Motifs: | MA0563.1 tCywTTTTTGG MA0563.2 CywTTTTTGG |
| Binding Sites: | MA0563.1.1 MA0563.1.10 MA0563.1.11 MA0563.1.12 MA0563.1.13 MA0563.1.14 MA0563.1.15 MA0563.1.16 MA0563.1.17 MA0563.1.18 MA0563.1.19 MA0563.1.2 MA0563.1.20 MA0563.1.3 MA0563.1.4 MA0563.1.5 MA0563.1.6 MA0563.1.7 MA0563.1.8 MA0563.1.9 MA0563.2.1 MA0563.2.10 MA0563.2.11 MA0563.2.12 MA0563.2.13 MA0563.2.14 MA0563.2.15 MA0563.2.16 MA0563.2.17 MA0563.2.18 MA0563.2.19 MA0563.2.2 MA0563.2.20 MA0563.2.3 MA0563.2.4 MA0563.2.5 MA0563.2.6 MA0563.2.7 MA0563.2.8 MA0563.2.9 |
| Publications: | Melzer R, Verelst W, Theissen G. The class E floral homeotic protein SEPALLATA3 is sufficient to loop DNA in 'floral quartet'-like complexes in vitro. Nucleic acids research 37:144-57 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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