Transcription Factor
| Accessions: | Q9LX86 (JASPAR 2024), T11523 (AthalianaCistrome v4_May2016) |
| Names: | C2H2-type zinc finger family protein, Q9LX86_ARATH, Uncharacterized protein At3g46070, Zinc finger-like protein, AT3G46070, T11523; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:C2H2 |
| Length: | 170 |
| Pfam Domains: | 35-60 C2H2-type zinc finger 86-110 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MVAESDNRDLTVDTAASCLMLLSGIGEHDGRKKRVFRCKTCERDFDSFQALGGHRASHSK 60 61 LTNSDDKSLPGSPKKKPKTTTTTTAHTCPICGLEFPMGQALGGHMRKHRNEKEREKASNV 120 121 LVTHSFMPETTTVTTLKKSSSGKRVACLDFDLTSVESFVNTELELGRTMY |
| Interface Residues: | 12, 13, 14, 36, 47, 48, 49, 50, 53, 63, 64, 66, 67, 70, 71, 72, 73, 75, 77, 78, 81, 96, 97, 98, 99, 100, 103 |
| 3D-footprint Homologues: | 5v3j_F, 2kmk_A, 6wmi_A, 2i13_A, 7ysf_A, 8gh6_A, 6ml4_A, 1mey_C, 7y3l_A, 7eyi_G, 7n5w_A, 8h9h_G |
| Binding Motifs: | M0334 / MA1381.1 yywhyyTCACTcthh MA1381.2 TCACTct |
| Publications: | Hichri I, Muhovski Y, Žižkova E, Dobrev PI, Franco-Zorrilla JM, Solano R, Lopez-Vidriero I, Motyka V, Lutts S. The Solanum lycopersicum Zinc Finger2 cysteine-2/histidine-2 repressor-like transcription factor regulates development and tolerance to salinity in tomato and Arabidopsis. Plant Physiol 164:1967-90 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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