Transcription Factor
Accessions: | sd (DrosophilaTF 1.1), P30052 (JASPAR 2024) |
Names: | SCAL_DROME |
Organisms: | Drosophila melanogaster |
Libraries: | DrosophilaTF 1.1 1, JASPAR 2024 2 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Length: | 440 |
Pfam Domains: | 78-169 TEA/ATTS domain family 185-432 TEA/ATTS domain family |
Sequence: (in bold interface residues) | 1 MKNITSSSTCSTGLLQLQNNLSCSELEVAEKTEQQAVGPGTIPSPWTPVNAGPPGALGSA 60 61 DTNGSMVDSKNLDVGDMSDDEKDLSSADAEGVWSPDIEQSFQEALSIYPPCGRRKIILSD 120 121 EGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQAKIKVQFWQPGLQPST 180 181 SQDFYDYSIKPFPQPPYPAGKTSTAVSGDETGIPPSQLPWEGRAIATHKFRLLEFTAFME 240 241 IQRDEIYHRHLFVQLGGKPSFSDPLLETVDIRQIFDKFPEKSGGLKDLYEKGPQNAFYLV 300 301 KCWADLNTDLTTGSETGDFYGVTSQYESNENVVLVCSTIVCSFGKQVVEKVESEYSRLEN 360 361 NRYVYRIQRSPMCEYMINFIQKLKNLPERYMMNSVLENFTILQVMRARETQETLLCIAYV 420 421 FEVAAQNSGTTHHIYRLIKE |
Interface Residues: | 124, 128, 145, 146, 149, 150, 153, 154, 157 |
3D-footprint Homologues: | 5gzb_A, 5no6_N |
Binding Motifs: | MA0243.1 gwmATTycwmrr sd wrnATkTnT MA0243.2 gwmATTycwmr |
Binding Sites: | MA0243.1.1 MA0243.1.10 MA0243.1.11 MA0243.1.12 MA0243.1.13 MA0243.1.14 MA0243.1.2 MA0243.1.3 MA0243.1.4 MA0243.1.5 MA0243.1.6 MA0243.1.7 / MA0243.1.8 MA0243.1.9 MA0243.2.1 MA0243.2.10 MA0243.2.11 MA0243.2.12 MA0243.2.13 MA0243.2.14 MA0243.2.2 MA0243.2.3 MA0243.2.4 MA0243.2.5 MA0243.2.6 MA0243.2.7 / MA0243.2.8 MA0243.2.9 |
Publications: | Lunde Karen, Trimble Jennifer L., Guichard Annabel, Guss Kirsten A., Nauber Ulrich, Bier Ethan. Activation of the knirps locus links patterning to morphogenesis of the second wing vein in Drosophila.. Development 130:235-248 (2003). [Pubmed] Bergman C.M, Carlson J.W, Celniker S.E. Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics (Oxford, England) 21:1747-9 (2005). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.