Transcription Factor
| Accessions: | T140943_1.02 (CISBP 1.02), B9GPL8 (JASPAR 2024) |
| Names: | B9GPL8_POPTR, T140943_1.02; |
| Organisms: | Populus trichocarpa, cottonwood |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:SBP |
| Length: | 1044 |
| Pfam Domains: | 106-183 SBP domain |
| Sequence: (in bold interface residues) | 1 MEEVGAQVAAPIFIHEALSSRYCDMTSMAKKHDLSYQSPNSQLQQHQFLQASREKNWNSK 60 61 AWDWDSVDDDGLGLNLGGSLTSVEEPVSRPNKRVRSGSPGNGSYPMCQVDNCKEDLSKAK 120 121 DYHRRHKVCQVHSKATKALVGKQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRK 180 181 TQPEDVTSRLLLPGNPDMNNNGNLDIVNLLTALARSQGKTYLPMIDFYVPPFVLTNCPTV 240 241 PDKDQLIQILNKINSLPLPMDLAAKLSNIASLNVKNPNQPYLGHQNRLNGTASSPSTNDL 300 301 LAVLSTTLAASAPDALAILSQRSSQSSDNDKSKLPGPNQVTVPHLQKRSNVEFPAVGVER 360 361 ISRCYESPAEDSDYQIQESRPNLPLQLFSSSPENESRQKPASSGKYFSSDSSNPIEERSP 420 421 SSSPPVVQKLFPLQSTAETMKSEKMSVSREVNANVEGDRSHGCVLPLELFRGPNREPDHS 480 481 SFQSFPYRGGYTSSSGSDHSPSSQNSDPQDRTGRIIFKLFDKDPSHFPGTLRTKIYNWLS 540 541 NSPSEMESYIRPGCVVLSVYLSMPSASWEQLERNLLQLVDSLVQDSDSDLWRSGRFLLNT 600 601 GRQLASHKDGKVRLCKSWRTWSSPELILVSPVAVIGGQETSLQLKGRNLTGPGTKIHCTY 660 661 MGGYTSKEVTDSSSPGSMYDEINVGGFKIHGPSPSILGRCFIEVENGFKGNSFPVIIADA 720 721 SICKELRLLESEFDENAVVSNIVSEEQTRDLGRPRSREEVMHFLNELGWLFQRKSMPSMH 780 781 EAPDYSLNRFKFLLIFSVERDYCVLVKTILDMLVERNTCRDELSKEHLEMLYEIQLLNRS 840 841 VKRRCRKMADLLIHYSIIGGDNSSRTYIFPPNVGGPGGITPLHLAACASGSDGLVDALTN 900 901 DPHEIGLSCWNSVLDANGLSPYAYAVMTKNHSYNLLVARKLADKRNGQISVAIGNEIEQA 960 961 ALEQEHVTISQFQRERKSCAKCASVAAKMHGRFLGSQGLLQRPYVHSMLAIAAVCVCVCL 1020 1021 FFRGAPDIGLVAPFKWENLNYGTI |
| Interface Residues: | 948, 988, 1009, 1010, 1013 |
| 3D-footprint Homologues: | 4fm9_A, 3pr5_B, 5edw_A, 1jx4_A, 6zy5_A |
| Binding Motifs: | M1568_1.02 sGTACGG MA0955.1 sGTACGG |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
| Related annotations: | PaperBLAST |
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