Transcription Factor
| Accessions: | Q9FMX2 (JASPAR 2024), T23707 (AthalianaCistrome v4_May2016), TCP7 (EEADannot 2023-12-22) |
| Names: | TCP7_ARATH, AT5G23280, T23707;, TCP7 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2, EEADannot 2023-12-22 3 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:TCP |
| Length: | 250 |
| Pfam Domains: | 34-148 TCP family transcription factor |
| Sequence: (in bold interface residues) | 1 MSINNNNNNNNNNNDGLMISSNGALIEQQPSVVVKKPPAKDRHSKVDGRGRRIRMPIICA 60 61 ARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGATNSTSLD 120 121 HKPTSLLGGTSPFILGKRVRADEDSNNSHNHSSVGKDETFTTTPAGFWAVPARPDFGQVW 180 181 SFAGAPQEMFLQQQHHHQQPLFVHQQQQQQAAMGEASAARVGNYLPGHLNLLASLSGGSP 240 241 GSDRREEDPR |
| Interface Residues: | 41, 42, 43, 52, 54, 99, 100, 101, 104 |
| 3D-footprint Homologues: | 7vp2_B, 7vp3_D, 3lap_B |
| Binding Motifs: | M0754 / MA1291.1 GTGGGrCCCAy EEAD0084 GGdhCC |
| Binding Sites: | MA1291.1.1 / MA1291.1.10 / MA1291.1.11 / MA1291.1.15 / MA1291.1.17 / MA1291.1.19 / MA1291.1.2 / MA1291.1.3 / MA1291.1.4 / MA1291.1.7 / MA1291.1.9 MA1291.1.12 MA1291.1.13 MA1291.1.14 / MA1291.1.5 / MA1291.1.6 / MA1291.1.8 MA1291.1.16 MA1291.1.18 MA1291.1.20 |
| Publications: | Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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