Transcription Factor

Accessions: Q8RU59 (JASPAR 2024), T09187 (AthalianaCistrome v4_May2016)
Names: AtbZIP48, Basic leucine-zipper 48, BZIP protein, Q8RU59_ARATH, Uncharacterized protein At2g04038, AT2G04038, bZIP48, T09187;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP
Length: 166
Pfam Domains: 72-119 Basic region leucine zipper
74-124 bZIP transcription factor
Sequence:
(in bold interface residues)
1 MIPAEINGYFQYLSPEYNVINMPSSPTSSLNYLNDLIINNNNYSSSSNSQDLMISNNSTS 60
61 DEDHHQSIMVLDERKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNR 120
121 VSETQNCVLKENSKLKEEASDLRQLVCELKSNKNNNNSFPREFEDN
Interface Residues: 78, 81, 82, 83, 85, 86, 89, 90
3D-footprint Homologues: 1gd2_G, 5hr4_C, 1dh3_C
Binding Motifs: M0223 / MA1345.1 KCCACGTCAGCawh
M0206 tKCCACGTCAGCawh
MA1345.2 KCCACGTCAGCa
Binding Sites: MA1345.1.1
MA1345.1.10
MA1345.1.11
MA1345.1.12
MA1345.1.13 / MA1345.1.18
MA1345.1.14
MA1345.1.15
MA1345.1.16
MA1345.1.17
MA1345.1.19
MA1345.1.2
MA1345.1.20
MA1345.1.3
MA1345.1.4
MA1345.1.5
MA1345.1.6
MA1345.1.7
MA1345.1.8
MA1345.1.9
MA1345.2.1
MA1345.2.10
MA1345.2.11
MA1345.2.12
MA1345.2.13 / MA1345.2.18
MA1345.2.14
MA1345.2.15
MA1345.2.16
MA1345.2.17
MA1345.2.19
MA1345.2.2
MA1345.2.20
MA1345.2.3
MA1345.2.4
MA1345.2.5
MA1345.2.6
MA1345.2.7
MA1345.2.8
MA1345.2.9
Publications: Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.