Transcription Factor

						

			
Accessions: jim (FlyZincFinger 1.0 )

			
Names: CG11352
Organisms: Drosophila melanogaster
Libraries: FlyZincFinger 1.0  1
1 Enuameh MS et al (2013) Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Res. 23(6):928-40. doi: 10.1101/gr.151472.112 [Pubmed]
Notes: family:Cys2His2 zinc finger
Length: 145
Pfam Domains:     11-23 C2H2-type zinc finger
    12-30 Zinc finger, C2H2 type
    27-50 Zinc-finger double domain
    40-62 Zinc finger, C2H2 type
    40-60 C2H2-type zinc finger
    40-62 C2H2-type zinc finger
    54-78 Zinc-finger double domain
    67-88 C2H2-type zinc finger
    68-90 Zinc finger, C2H2 type
    68-90 C2H2-type zinc finger
   83-106 Zinc-finger double domain
   96-118 C2H2-type zinc finger
   96-118 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 HKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLR   60
  61 IHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQD  120
 121 VSPHLIFKNGPHPTLWPSDVPFPGE
Interface Residues: 12, 22, 23, 24, 25, 26, 28, 29, 31, 32, 33, 35, 50, 51, 52, 53, 54, 56, 57, 61, 64, 65, 78, 79, 80, 81, 82, 83, 84, 85, 86, 88, 106, 107, 108, 109, 110, 111, 112, 113, 114, 117
3D-footprint Homologues: 2kmk_A, 1tf3_A, 7w1m_H, 8cuc_F, 5v3j_F, 5ei9_F, 2drp_D, 8ssq_A, 1tf6_A, 2gli_A, 8ssu_A, 2i13_A, 5kkq_D, 7eyi_G, 6e94_A, 7ysf_A, 6wmi_A, 2jpa_A, 1ubd_C, 3uk3_C, 6jnm_A, 7n5w_A, 5yel_A, 7txc_E, 5kl3_A, 1g2f_F, 5yj3_D, 5k5i_A, 5und_A, 6ml4_A, 4x9j_A, 1mey_C, 6blw_A, 6u9q_A, 8h9h_G, 2lt7_A, 6a57_A, 1yuj_A, 7y3l_A, 1llm_D, 5k5l_F, 8gn3_A, 2wbs_A, 1f2i_J, 4m9v_C, 7y3m_I
Binding Motifs: jim_F1-9_SOLEXA_2.5_FBgn0027339 rmAAaAAAAmmammm
jim_SANGER_2.5_FBgn0027339 AAAAAAAamsA
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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