Transcription Factor

						

			
Accessions: Q9STX0 (JASPAR 2024), T19768 (AthalianaCistrome v4_May2016)

			
Names: Probable WRKY transcription factor 7, WRKY DNA-binding protein 7, WRKY7_ARATH, AT4G24240, T19768;, WRKY7
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:WRKY
Length: 353
Pfam Domains:   242-278 Plant zinc cluster domain
  281-339 WRKY DNA -binding domain
Sequence: 
(in bold interface residues)		   1 MTVELMMSSYSGGGGGGDGFPAIAAAAKMEDTALREAASAGIHGVEEFLKLIGQSQQPTE   60
  61 KSQTEITAVTDVAVNSFKKVISLLGRSRTGHARFRRAPASTQTPFKQTPVVEEEVEVEEK  120
 121 KPETSSVLTKQKTEQYHGGGSAFRVYCPTPIHRRPPLSHNNNNNQNQTKNGSSSSSPPML  180
 181 ANGAPSTINFAPSPPVSATNSFMSSHRCDTDSTHMSSGFEFTNPSQLSGSRGKPPLSSAS  240
 241 LKRRCNSSPSSRCHCSKKRKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSPHP  300
 301 RGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNHALVLETTTMNHDKTL
Interface Residues: 287, 288, 289, 291, 292, 303
3D-footprint Homologues: 6j4e_B, 6j4f_F, 6j4g_B, 6ir8_A, 7z0u_A
Binding Motifs: M0826 / MA1313.1 rkcGTTGACTTTtt
M0843 wadaarahaaAAAGTCAACGm
MA1313.2 cGTTGACTTTt
Binding Sites: MA1313.1.1
MA1313.1.10
MA1313.1.11
MA1313.1.12
MA1313.1.13
MA1313.1.14
MA1313.1.15
MA1313.1.16
MA1313.1.17
MA1313.1.18
MA1313.1.19
MA1313.1.2
MA1313.1.20
MA1313.1.3
MA1313.1.4
MA1313.1.5
MA1313.1.6
MA1313.1.7
MA1313.1.8
MA1313.1.9
MA1313.2.1
MA1313.2.10
MA1313.2.11
MA1313.2.12
MA1313.2.13
MA1313.2.14
MA1313.2.15
MA1313.2.16
MA1313.2.17
MA1313.2.18
MA1313.2.19
MA1313.2.2
MA1313.2.20
MA1313.2.3
MA1313.2.4
MA1313.2.5
MA1313.2.6
MA1313.2.7
MA1313.2.8
MA1313.2.9
			
Publications:  Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.