Transcription Factor
| Accessions: | T023827_1.02 (CISBP 1.02), Q93ZE2 (JASPAR 2024), T02541 (AthalianaCistrome v4_May2016) |
| Names: | AT1G77920, T023827_1.02;, AtbZIP50, bZIP transcription factor 50, TGA7_ARATH, Transcription factor TGA7, bZIP50, T02541; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:bZIP, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq |
| Length: | 368 |
| Pfam Domains: | 92-134 bZIP transcription factor 94-134 Basic region leucine zipper 168-244 Seed dormancy control |
| Sequence: (in bold interface residues) | 1 MMSSSSPTQLASLRDMGIYEPFQQIVGWGNVFKSDINDHSPNTATSSIIQVDPRIDDHNN 60 61 NIKINYDSSHNQIEAEQPSSNDNQDDDGRIHDKMKRRLAQNREAARKSRLRKKAYVQQLE 120 121 ESRLKLSQLEQELEKVKQQGHLGPSGSINTGIASFEMEYSHWLQEQSRRVSELRTALQSH 180 181 ISDIELKMLVESCLNHYANLFQMKSDAAKADVFYLISGMWRTSTERFFQWIGGFRPSELL 240 241 NVVMPYLQPLTDQQILEVRNLQQSSQQAEDALSQGIDKLQQSLAESIVIDAVIESTHYPT 300 301 HMAAAIENLQALEGFVNQADHLRQQTLQQMAKILTTRQSARGLLALGEYLHRLRALSSLW 360 361 AARPQEPT |
| Interface Residues: | 101, 102, 104, 105, 108, 109, 291, 293, 295, 296, 298, 307 |
| 3D-footprint Homologues: | 2dgc_A, 1dh3_C, 3e54_A |
| Binding Motifs: | M0259_1.02 krTGACGTma MA1070.1 krTGACGTma M0211 / MA1342.1 tGmTGACGTCAyywtyy M0182 sysACGTCAyCayc MA1070.2 wwgaTGACGTCAycw MA1070.3 aTGACGTCAy |
| Binding Sites: | MA1070.3.3 / MA1070.3.4 MA1070.3.10 / MA1070.3.20 / MA1070.3.7 / MA1070.3.8 / MA1070.3.9 MA1342.1.1 MA1342.1.10 MA1342.1.11 MA1342.1.12 MA1342.1.13 MA1342.1.14 MA1342.1.15 MA1342.1.16 MA1342.1.17 MA1342.1.18 MA1342.1.19 MA1342.1.2 MA1342.1.20 MA1342.1.3 MA1342.1.4 MA1342.1.5 MA1342.1.6 MA1342.1.7 MA1342.1.8 MA1342.1.9 MA1070.2.1 MA1070.2.2 MA1070.2.3 MA1070.2.4 MA1070.2.5 MA1070.2.6 MA1070.2.7 MA1070.2.8 MA1070.2.9 MA1070.2.10 MA1070.2.11 MA1070.2.12 MA1070.2.13 MA1070.2.14 MA1070.2.15 MA1070.2.16 MA1070.2.17 MA1070.2.18 MA1070.2.20 MA1070.2.19 MA1070.3.15 / MA1070.3.5 MA1070.3.16 / MA1070.3.6 MA1070.3.1 / MA1070.3.12 MA1070.3.11 MA1070.3.13 / MA1070.3.2 MA1070.3.14 MA1070.3.17 MA1070.3.18 MA1070.3.19 |
| Publications: | Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.