Transcription Factor

Accessions: AtMYB15 (AthaMYB 1.0)
Names: At3g23250, AtMYB15, Myb domain protein 15, MYB transcription factor, Myb-related transcription factor, Putative myb-related transcription factor
Organisms: Arabidopsis thaliana
Libraries: AthaMYB 1.0 1
1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Uniprot: Q9LTC4
Length: 286
Pfam Domains: 14-61 Myb-like DNA-binding domain
17-76 Myb-like DNA-binding domain
67-112 Myb-like DNA-binding domain
70-117 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MGRAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPKQAGLLRCGKSCRLRWMNY 60
61 LKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLEDYQ 120
121 PAKPKTSNKKKGTKPKSESVITSSNSTRSESELADSSNPSGESLFSTSPSTSEVSSMTLI 180
181 SHDGYSNEINMDNKPGDISTIDQECVSFETFGADIDESFWKETLYSQDEHNYVSNDLEVA 240
241 GLVEIQQEFQNLGSANNEMIFDSEMDFWFDVLARTGGEQDLLAGL*
Interface Residues: 14, 49, 50, 51, 52, 54, 55, 58, 59, 60, 101, 102, 105, 106, 109, 110, 111
3D-footprint Homologues: 3osg_A, 1vfc_A, 1w0t_A, 2kdz_A, 7xur_A, 5eyb_B, 6kks_A, 1mse_C, 3zqc_A
Binding Motifs: AtMYB15_I wwcaGTTr
AtMYB15_II GbTwGkTG
Binding Sites: AAAAGTTA
ATTAGTTG
GCTTGTTG
GGTAGGTG
GGTTGGTG
GTCAGTTA
GTTAGTTG
TACTGTTG
TGCGGTTG
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.