Transcription Factor
| Accessions: | T151227_1.02 (CISBP 1.02), D7L3Y2 (JASPAR 2024) |
| Names: | scaffold_301743.1, T151227_1.02;, D7L3Y2_ARALL |
| Organisms: | Arabidopsis lyrata, Arabidopsis lyrata subsp. lyrata |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:TCP |
| Length: | 452 |
| Pfam Domains: | 75-181 TCP family transcription factor |
| Sequence: (in bold interface residues) | 1 MATLDSSPSYDDHRRRRRRLDEDADLPQYARPVADDQYLHPPPPSSMRHRATSEAADGGC 60 61 GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKA 120 121 VDWLIKKAKSSIDELAELPPWNPADAIRLAAANAKPRRTTAKTQISLSPPPQQQQQQQQL 180 181 HFGAGFDRGGAEHPSNESSFLPPSMDSDSIADTIKSFFPVVGSSTEAPPNHQLMHNYHHH 240 241 PPDLLSRTNSQNQDLRLSLQSFPDGPPSLLHHNHHHHTSASASEPVLFYGQSNPLGFDTS 300 301 NSVSWEQQSSEFGRIQRLVAWNSGGGGAADTGNGGGFVFAPPPSTASFQPVLGQSQQLYS 360 361 QRGPLQSSYSPMIRAWFDPHHHHQSISTDDINHHHHHHLPPPVHQSAIPGIGFASGEFSS 420 421 GFRIPARFQGQEEEQHDGLTHKPSSASSISRH |
| Interface Residues: | 79, 80, 81, 94, 96 |
| 3D-footprint Homologues: | 7vp2_B, 7vp3_D |
| Binding Motifs: | M1659_1.02 ykGGGACCAC MA1054.1 ykGGGACCAC MA1054.2 kGGGACCAC |
| Publications: | Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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