Transcription Factor
| Accessions: | Q9ZQ70 (JASPAR 2024), T07135 (AthalianaCistrome v4_May2016) |
| Names: | Probable WRKY transcription factor 3, WRKY DNA-binding protein 3, WRKY3_ARATH, AT2G03340, T07135;, WRKY3 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:WRKY |
| Length: | 513 |
| Pfam Domains: | 250-306 WRKY DNA -binding domain 414-472 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MAEKEEKEPSKLKSSTGVSRPTISLPPRPFGEMFFSGGVGFSPGPMTLVSNLFSDPDEFK 60 61 SFSQLLAGAMASPAAAAVAAAAVVATAHHQTPVSSVGDGGGSGGDVDPRFKQSRPTGLMI 120 121 TQPPGMFTVPPGLSPATLLDSPSFFGLFSPLQGTFGMTHQQALAQVTAQAVQGNNVHMQQ 180 181 SQQSEYPSSTQQQQQQQQQASLTEIPSFSSAPRSQIRASVQETSQGQRETSEISVFEHRS 240 241 QPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYK 300 301 GQHNHELPQKRGNNNGSCKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEE 360 361 VGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRW 420 421 RKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSS 480 481 HQLRPNNQHNTSTVNFNHQQPVARLRLKEEQIT |
| Interface Residues: | 256, 257, 258, 260, 261, 272, 421, 422, 423, 425, 426, 437 |
| 3D-footprint Homologues: | 6j4e_B, 6j4f_F, 6j4g_B, 6ir8_A, 7z0u_A |
| Binding Motifs: | M0829 / MA1309.1 aaaAGTCAAmg |
| Binding Sites: | MA1309.1.13 / MA1309.1.20 MA1309.1.3 MA1309.1.14 MA1309.1.18 MA1309.1.7 MA1309.1.6 MA1309.1.19 MA1309.1.8 MA1309.1.2 MA1309.1.1 MA1309.1.16 MA1309.1.17 MA1309.1.9 MA1309.1.15 MA1309.1.5 MA1309.1.10 MA1309.1.11 MA1309.1.12 MA1309.1.4 |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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