Transcription Factor

Accessions: T09752 (AthalianaCistrome v4_May2016), Q9ZQ25 (JASPAR 2024)
Names: ANAC038, AT2G24430, T09752;, NAC domain containing protein 38, NAM (No apical meristem, Q9ZQ25_ARATH
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC
Length: 316
Pfam Domains: 16-143 No apical meristem (NAM) protein
Sequence:
(in bold interface residues)
1 MEQGDHQQHKKEEEALPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDLNKSEPWE 60
61 LPEKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMKKT 120
121 LVFYRGRAPRGEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKKYISTSSSST 180
181 SHHHNNHTRASILSTNNNNPNYSSDLLQLPPHLQPHPSLNINQSLMANAVHLAELSRVFR 240
241 ASTSTTMDSSHQQLMNYTHMPVSGLNLNLGGALVQPPPVVSLEDVAAVSASYNGENGFGN 300
301 VEMSQCMDLDGYWPSY
Interface Residues: 82, 87, 89, 98, 100, 102, 124, 127, 128, 129, 130, 133
3D-footprint Homologues: 7xp3_B, 3swp_A, 1dmu_A
Binding Motifs: M0667 TwrCkTGtdkwacAmGww
M0705 grTwaCkTrtdwyaCAAGwAA
MA2033.1 / UN0345.1 wggTtrCkTGTawcACAAGtwAyc
MA2033.2 TtrCkTGTawcACAAGtwA
Binding Sites: UN0345.1.3
UN0345.1.4
UN0345.1.5
MA2033.1.1 / UN0345.1.1
MA2033.1.4 / UN0345.1.10
UN0345.1.11
MA2033.1.6 / UN0345.1.12
MA2033.1.7 / UN0345.1.13
UN0345.1.14
MA2033.1.8 / UN0345.1.15
UN0345.1.16
MA2033.1.9 / UN0345.1.17
UN0345.1.18
UN0345.1.19
UN0345.1.2
UN0345.1.20
UN0345.1.6
MA2033.1.2 / UN0345.1.7
UN0345.1.8
MA2033.1.3 / UN0345.1.9
MA2033.1.10
MA2033.1.11
MA2033.1.12
MA2033.1.13
MA2033.1.14
MA2033.1.15
MA2033.1.16
MA2033.1.17
MA2033.1.18
MA2033.1.19
MA2033.1.20
MA2033.1.5
MA2033.2.7
MA2033.2.1
MA2033.2.2
MA2033.2.4
MA2033.2.10
MA2033.2.11
MA2033.2.12
MA2033.2.13
MA2033.2.14
MA2033.2.15
MA2033.2.16
MA2033.2.17
MA2033.2.18
MA2033.2.19
MA2033.2.20
MA2033.2.3
MA2033.2.5
MA2033.2.6
MA2033.2.8
MA2033.2.9
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]
Related annotations: PaperBLAST

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