Transcription Factor
| Accessions: | T012439_1.02 (CISBP 1.02), Q8GZ38 (JASPAR 2024) |
| Names: | T012439_1.02;, UNE10, AtbHLH16, Basic helix-loop-helix protein 16, bHLH 16, bHLH transcription factor bHLH016, Protein UNFERTILIZED EMBRYO SAC 10, Transcription factor EN 108, Transcription factor UNE10, UNE10_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:bHLH |
| Length: | 399 |
| Pfam Domains: | 218-263 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSQCVPNCHIDDTPAAATTTVRSTTAADIPILDYEVAELTWENGQLGLHGLGPPRVTASS 60 61 TKYSTGAGGTLESIVDQATRLPNPKPTDELVPWFHHRSSRAAMAMDALVPCSNLVHEQQS 120 121 KPGGVGSTRVGSCSDGRTMGGGKRARVAPEWSGGGSQRLTMDTYDVGFTSTSMGSHDNTI 180 181 DDHDSVCHSRPQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLV 240 241 PNSSKTDKASMLDEVIEYLKQLQAQVSMMSRMNMPSMMLPMAMQQQQQLQMSLMSNPMGL 300 301 GMGMGMPGLGLLDLNSMNRAAASAPNIHANMMPNPFLPMNCPSWDASSNDSRFQSPLIPD 360 361 PMSAFLACSTQPTTMEAYSRMATLYQQMQQQLPPPSNPK |
| Interface Residues: | 212, 216, 217, 218, 219, 221, 222, 225, 226, 248 |
| 3D-footprint Homologues: | 5sy7_B, 7z5k_B, 1an4_A, 7d8t_A, 5eyo_A, 7xi3_A, 4h10_A, 7f2f_B, 5gnj_I, 1a0a_B, 5v0l_A, 7rcu_E, 5i50_B, 6g1l_A, 4zpk_A, 7ssa_L, 5nj8_D, 4h10_B, 2ql2_D, 8osl_P, 8osl_O |
| Binding Motifs: | M0158_1.02 cCACGTGm MA1074.1 cCACGTGm MA1074.2 CACGTGm |
| Publications: | Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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