Transcription Factor

Accessions: AtMYB83 (AthaMYB 1.0)
Names: At3g08500, AtMYB83, Myb domain protein 83, Myb family transcription factor, MYB-family transcription factor, putative, Putative transcription factor MYB83, Putative uncharacterized protein At3g08500
Organisms: Arabidopsis thaliana
Libraries: AthaMYB 1.0 1
1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Uniprot: Q9C6U1
Length: 344
Pfam Domains: 32-79 Myb-like DNA-binding domain
35-94 Myb-like DNA-binding domain
85-129 Myb-like DNA-binding domain
88-138 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MMMRKPDITTIRDKGKPNHACGGNNNKPKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIAR 60
61 NAGLLRCGKSCRLRWINYLRPDLKRGSFSPQEEDLIFHLHSILGNRWSQIATRLPGRTDN 120
121 EIKNFWNSTLKKRLKNNSNNNTSSGSSPNNSNSNSLDPRDQHVDMGGNSTSLMDDYHHDE 180
181 NMMTVGNTMRMDSSSPFNVGPMVNSVGLNQLYDPLMISVPDNGYHQMGNTVNVFSVNGLG 240
241 DYGNTILDPISKRVSVEGDDWFIPPSENTNVIACSTSNNLNLQALDPCFNSKNLCHSESF 300
301 KVGNVLGIENGSWEIENPKIGDWDLDGLIDNNSSFPFLDFQVD*
Interface Residues: 32, 67, 68, 69, 70, 72, 73, 76, 77, 78, 119, 120, 123, 124, 127, 128, 129
3D-footprint Homologues: 3osg_A, 2kdz_A, 7xur_A, 5eyb_B, 6kks_A, 3zqc_A, 1mse_C
Binding Motifs: AtMYB83_I awmAGTTr
AtMYB83_II GywdGTTr
Binding Sites: AAAAGTTA
ACAAGTTA
AGGTTA
ATTAGTTG
GCTTGTTG
GTCAGTTA
GTTAGTTG
TACTGTTG
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.