Transcription Factor

Accessions: Q9FRL5 (JASPAR 2024), T00023 (AthalianaCistrome v4_May2016)
Names: AtHB-33, AtZHD5, Homeobox protein 33, ZHD5_ARATH, Zinc-finger homeodomain protein 5, AT1G75240, ATHB33, T00023;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:ZF-HD
Length: 309
Pfam Domains: 72-127 ZF-HD protein dimerisation region
Sequence:
(in bold interface residues)
1 MDMRSHEMIERRREDNGNNNGGVVISNIISTNIDDNCNGNNNNTRVSCNSQTLDHHQSKS 60
61 PSSFSISAAAKPTVRYRECLKNHAASVGGSVHDGCGEFMPSGEEGTIEALRCAACDCHRN 120
121 FHRKEMDGVGSSDLISHHRHHHYHHNQYGGGGGRRPPPPNMMLNPLMLPPPPNYQPIHHH 180
181 KYGMSPPGGGGMVTPMSVAYGGGGGGAESSSEDLNLYGQSSGEGAGAAAGQMAFSMSSSK 240
241 KRFRTKFTTDQKERMMDFAEKLGWRMNKQDEEELKRFCGEIGVKRQVFKVWMHNNKNNAK 300
301 KPPTPTTTL
Interface Residues: 6, 7, 10, 13, 14, 241, 244, 290, 293, 294, 297, 298
3D-footprint Homologues: 7ssa_L, 3d1n_M, 2hdd_A, 1du0_A
Binding Motifs: M0857 / MA1326.1 ayrTrATTAry
M0859 wwwwahrTrATTAry
MA1326.2 rTrATTAr
Binding Sites: MA1326.2.16
MA1326.1.1
MA1326.1.10
MA1326.1.11
MA1326.1.12
MA1326.1.13
MA1326.1.14 / MA1326.1.8
MA1326.1.15
MA1326.1.16
MA1326.1.17
MA1326.1.18
MA1326.1.19
MA1326.1.2
MA1326.1.20
MA1326.1.3
MA1326.1.4
MA1326.1.5
MA1326.1.6
MA1326.1.7
MA1326.1.9
MA1326.2.1
MA1326.2.10
MA1326.2.11
MA1326.2.12
MA1326.2.13
MA1326.2.14 / MA1326.2.8
MA1326.2.15
MA1326.2.17
MA1326.2.18
MA1326.2.19
MA1326.2.2
MA1326.2.20
MA1326.2.3
MA1326.2.4
MA1326.2.5
MA1326.2.6
MA1326.2.7
MA1326.2.9
Publications: Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.