Transcription Factor
| Accessions: | Q5DW98 (JASPAR 2024) |
| Names: | Q5DW98_PEA |
| Organisms: | Pisum sativum |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q5DW98 |
| Length: | 613 |
| Sequence: (in bold interface residues) | 1 MHSVIKGGWRPTFALAKKNDSQERKTRIRLSKDKRKAMVESFIKKYQESNGGNFPPITVT 60 61 HKEVGGSFYTVREIVREVIQENRVLGPAKFNLDEFSTDRFLEQNPLGSIASGPQPFLGES 120 121 SNEVHPEHNKVPDTNDRLLSVSDNGHVISVDHVDVTNKETVEATVVSDEYYTGDEYPVVV 180 181 NGHVIYDSQVDVTNNGSVEAAVVSDGYFTGAELEIVDKEHGVDSSKVDVTDKESVEAVVV 240 241 SDDDCTVGELEIVDKERGIDSSKVDVTNKESVEAVVVSDDDCTVGELEIVDKEGGIDSSK 300 301 VDVTNKESVEAVVVSDDDCTGGELEIVDKEGGIDSSKVDVTNKESVEAVVVSDDDCTGGE 360 361 LKIVDQGRDVDGSKVDVINKESNEATIPENKPTEPKLDVEQELAATTMPSSAKVNVLTKD 420 421 LIVETFPLRSVARTSSGREGSEELKDSGNSLERDTKKLELEQGKNSELKGIEPTDNSTLL 480 481 DEKFENALGNKILKEISNPRHDVESANHSTHNKQVTVSHQKAIETNNQSQVEDVAKKNIQ 540 541 DDSKPSEESLHKADKYRLDQLGGNSQRRVNTTVDRINLESWDGKLKNSAKKEANPLLALL 600 601 KAIVNAFGKLLSE |
| Interface Residues: | 71, 72, 73, 74, 76, 77, 544 |
| 3D-footprint Homologues: | 5i2d_R, 6s85_C |
| Binding Motifs: | MA0127.1 AcTTCTTATk |
| Binding Sites: | MA0127.1.1 MA0127.1.10 MA0127.1.11 MA0127.1.12 MA0127.1.13 MA0127.1.14 MA0127.1.15 MA0127.1.16 MA0127.1.17 MA0127.1.18 MA0127.1.19 MA0127.1.2 MA0127.1.20 MA0127.1.3 MA0127.1.4 MA0127.1.5 MA0127.1.6 MA0127.1.7 MA0127.1.8 MA0127.1.9 |
| Publications: | Mertin S., McDowall S. G., Harley V. R. The DNA-binding specificity of SOX9 and other SOX proteins. Nucleic Acids Res. 27:1359-1364 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.