Transcription Factor
| Accessions: | T061544_1.02 (CISBP 1.02), P53035 (JASPAR 2024) |
| Names: | MIG2, T061544_1.02;, MIG2_YEAST |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 382 |
| Pfam Domains: | 33-58 Zinc-finger double domain 47-69 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MPKKQTNFPVDNENRPFRCDTCHRGFHRLEHKKRHLRTHTGEKPHHCAFPGCGKSFSRSD 60 61 ELKRHMRTHTGQSQRRLKKASVQKQEFLTVSGIPTIASGVMIHQPIPQVLPANMAINVQA 120 121 VNGGNIIHAPNAVHPMVIPIMAQPAPIHASAASFQPATSPMPISTYTPVPSQSFTSFQSS 180 181 IGSIQSNSDVSSIFSNMNVRVNTPRSVPNSPNDGYLHQQHIPQQYQHQTASPSVAKQQKT 240 241 FAHSLASALSTLQKRTPVSAPSTTIESPSSPSDSSHTSASSSAISLPFSNAPSQLAVAKE 300 301 LESVYLDSNRYTTKTRRERAKFEIPEEQEEDTNNSSSGSNEEEHESLDHESSKSRKKLSG 360 361 VKLPPVRNLLKQIDVFNGPKRV |
| Interface Residues: | 3, 25, 27, 28, 29, 30, 31, 33, 34, 35, 57, 58, 59, 60, 61, 62, 63, 64, 65, 68, 83, 86 |
| 3D-footprint Homologues: | 1tf3_A, 5k5i_A, 8cuc_F, 2kmk_A, 7y3l_A, 3uk3_C, 2drp_D, 1f2i_J, 7eyi_G, 6a57_A, 8ssu_A, 6ml4_A, 5v3j_F, 1g2f_F, 7n5w_A, 6blw_A, 5kkq_D, 2lt7_A, 6u9q_A, 5yel_A, 4x9j_A, 2i13_A, 8h9h_G, 1llm_D, 7txc_E, 5kl3_A, 1ubd_C, 7ysf_A, 5ei9_F, 2jpa_A, 8ssq_A, 1mey_C, 7w1m_H, 6jnm_A, 5und_A, 4m9v_C, 6e94_A, 6wmi_A, 8gn3_A, 2gli_A, 7y3m_I, 2wbs_A, 5yj3_D, 1tf6_A |
| Binding Motifs: | M0519_1.02 rtgyGGGGwr MA0338.1 CCCCrCa MA0338.2 CCCCrC |
| Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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