Transcription Factor

Accessions: T008695_1.02 (CISBP 1.02)
Names: Hmga2, T008695_1.02;
Organisms: Mus musculus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:AT hook
Length: 129
Pfam Domains: 26-36 AT hook motif
46-58 AT hook motif
74-85 AT hook motif
Sequence:
(in bold interface residues)
1 MSARGEGAGQPSTSAQGQPAAPVPQKRGRGRPRKQQQEPTCEPSPKRPRGRPKGSKNKSP 60
61 SKAAQKKAETIGEKRPRGRPRKWPQQVVQKKPAQGGEFGERTRCHESQTSSLPHNPYGQE 120
121 LIASTLMGD
Interface Residues: 9, 11, 13, 20, 21, 23, 77, 79, 81
3D-footprint Homologues: 5tkz_B, 7kuf_A, 5bs8_A
Binding Motifs: M0132_1.02 smgsrwwwww
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.