Transcription Factor
| Accessions: | DREB2C (ArabidopsisPBM 20140210), Q8LFR2 (JASPAR 2024), T08798 (AthalianaCistrome v4_May2016) |
| Names: | AtERF48, DREB2C, Dehydration-responsive element-binding protein 2C, DRE2C_ARATH, Protein DREB2C, AT2G40340, ERF48, T08798; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | AP2/EREBP (DREB), ecotype:Col-0, experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 341 |
| Pfam Domains: | 70-120 AP2 domain |
| Sequence: (in bold interface residues) | 1 MPSEIVDRKRKSRGTRDVAEILRQWREYNEQIEAESCIDGGGPKSIRKPPPKGSRKGCMK 60 61 GKGGPENGICDYRGVRQRRWGKWVAEIREPDGGARLWLGTFSSSYEAALAYDEAAKAIYG 120 121 QSARLNLPEITNRSSSTAATATVSGSVTAFSDESEVCAREDTNASSGFGQVKLEDCSDEY 180 181 VLLDSSQCIKEELKGKEEVREEHNLAVGFGIGQDSKRETLDAWLMGNGNEQEPLEFGVDE 240 241 TFDINELLGILNDNNVSGQETMQYQVDRHPNFSYQTQFPNSNLLGSLNPMEIAQPGVDYG 300 301 CPYVQPSDMENYGIDLDHRRFNDLDIQDLDFGGDKDVHGST |
| Interface Residues: | 37, 76, 78, 79, 80, 84, 86, 88, 91, 95, 97 |
| 3D-footprint Homologues: | 5n8r_B, 7wq5_A, 5wx9_A, 1gcc_A, 7et4_D |
| Binding Motifs: | DREB2C gGCGGCCGCc DREB2C_2 sCACCGACAw MA0986.1 CACCGACA M0128 gGmGGyGghggyGGyGGtGGw |
| Publications: | Je J, Song C, Hwang JE, Chung WS, Lim CO. DREB2C acts as a transcriptional activator of the thermo tolerance-related phytocystatin 4 (AtCYS4) gene. Transgenic Res 23:109-23 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.