Transcription Factor

Accessions: HTF4_MOUSE (HOCOMOCO 10), Q61286 (JASPAR 2024)
Names: Class A helix-loop-helix transcription factor ME1, DNA-binding protein HTF4, E-box-binding protein, HTF4_MOUSE, TCF-12, Transcription factor 12, Transcription factor HTF-4
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1, JASPAR 2024 2
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q61286
Length: 706
Pfam Domains: 602-655 Helix-loop-helix DNA-binding domain
Sequence:
(in bold interface residues)
1 MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGMDERGGTTSW 60
61 GTSGQPSPSYDSSRGFTDSPHYSDHLNDSRLGTHEGLSPTPFMNSNLIGKTSERGSFSLY 120
121 SRDSGLSGCQSSLLRQDLGLGSPAQLSSSGKPGTPYYSFSATSSRRRPLHDSVALDPLQA 180
181 KKVRKVPPGLPSSVYAPSPNSDDFNRESPSYPSPKPPTSMFASTFFMQDGTHSSSDLWSS 240
241 SNGMSQPGFGGILGTSTSHMSQSSSYGSLHSHDRLSYPPHSVSPTDINTSLPPMSSFHRG 300
301 STSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYSPDHTSSSFPSNP 360
361 STPVGSPSPLTGTSQWPRAGGQAPSSPSYENSLHSLKNRVEQQLHEHLQDAMSFLKDVCE 420
421 QSRMEDRLDRLDDAIHVLRNHAVGPSTSLPTSHSDIHSLLGPSHNASIGNLNSNYGGSSL 480
481 VTNSRSASMVGTHREDSVSLNGNHSVLSSTVAASNTELNHKTPENFRGGVQNQSGSVVPT 540
541 EIKTENKEKDENLHEPPSSDDMKSDDESSQKDIKVSSRGRTSSTNEDEDLNPEQKIEREK 600
601 ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLEQQVRE 660
661 RNLNPKAACLKRREEEKVSAASAEPPNTLPGAHPGLSESTNPMGHL
Interface Residues: 603, 606, 607, 609, 610, 611, 613, 614
3D-footprint Homologues: 2ypa_A, 7z5k_B, 6g1l_A, 6od3_F, 7d8t_A, 2ql2_D, 2ypa_B, 2ql2_A
Binding Motifs: MA0521.1 rRCAGCTGswg
HTF4_MOUSE.H10MO.C|M01152 rrsrrCAGCTG
MA0521.2 gvaCAGCTGtbs
MA0521.3 CAGCTG
Binding Sites: MA0521.3.20
MA0521.3.1 / MA0521.3.10 / MA0521.3.13 / MA0521.3.14 / MA0521.3.15 / MA0521.3.16 / MA0521.3.17 / MA0521.3.18 / MA0521.3.2 / MA0521.3.3 / MA0521.3.4 / MA0521.3.5 / MA0521.3.6 / MA0521.3.7 / MA0521.3.8 / MA0521.3.9
MA0521.3.19
MA0521.1.16
MA0521.1.17
MA0521.1.2
MA0521.1.3
MA0521.1.4
MA0521.1.5
MA0521.1.15
MA0521.1.1
MA0521.1.10
MA0521.1.11
MA0521.1.12
MA0521.1.13
MA0521.1.14
MA0521.1.18
MA0521.1.19
MA0521.1.20
MA0521.1.6
MA0521.1.7
MA0521.1.8
MA0521.1.9
MA0521.2.1
MA0521.2.10 / MA0521.2.14
MA0521.2.11
MA0521.2.12
MA0521.2.13 / MA0521.2.15
MA0521.2.14 / MA0521.2.16
MA0521.2.15 / MA0521.2.17
MA0521.2.16 / MA0521.2.18
MA0521.2.17 / MA0521.2.19
MA0521.2.18 / MA0521.2.20
MA0521.2.19
MA0521.2.2
MA0521.2.20
MA0521.2.3 / MA0521.2.5
MA0521.2.4 / MA0521.2.6
MA0521.2.5 / MA0521.2.7
MA0521.2.6 / MA0521.2.8
MA0521.2.11 / MA0521.2.7
MA0521.2.12 / MA0521.2.8
MA0521.2.13 / MA0521.2.9
MA0521.2.10
MA0521.2.3
MA0521.2.4
MA0521.2.9
MA0521.3.11
MA0521.3.12
Publications: Zhang Y, Doyle K, Bina M. Interactions of HTF4 with E-box motifs in the long terminal repeat of human immunodeficiency virus type 1. Journal of virology 66:5631-4 (1992). [Pubmed]
Related annotations: PaperBLAST

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