Transcription Factor
| Accessions: | RAP2.3 (ArabidopsisPBM 20140210), P42736 (JASPAR 2024) |
| Names: | ATEBP, ERF72, RAP2.3, Cadmium-induced protein AS30, Ethylene response factor 72, Ethylene-responsive element binding protein, Ethylene-responsive transcription factor RAP2-3, Protein RELATED TO APETALA2 3, RAP23_ARATH, Related to AP2 3 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | AP2/EREBP (ERF) |
| Length: | 248 |
| Pfam Domains: | 78-127 AP2 domain |
| Sequence: (in bold interface residues) | 1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVKEEA 60 61 VKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDV 120 121 AAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSFPV 180 181 ECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELDGNTAEQPSQLDESVSEVDMWML 240 241 DDVIASYE |
| Interface Residues: | 83, 85, 86, 87, 91, 93, 95, 100, 102, 104 |
| 3D-footprint Homologues: | 7wq5_A, 1gcc_A, 5wx9_A, 7et4_D |
| Binding Motifs: | RAP2.3 rgCGCCGCma RAP2.3_2 smGCCGCmaw RAP2.3_3 gCGCCGCCAw MA1051.1 gCGCCGCm |
| Publications: | Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.