Transcription Factor
| Accessions: | Q6PV68 (JASPAR 2024) |
| Names: | AP2-like ethylene-responsive transcription factor SMZ, Protein SCHLAFMUTZE, SMZ_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q6PV68 |
| Length: | 346 |
| Pfam Domains: | 121-170 AP2 domain |
| Sequence: (in bold interface residues) | 1 MLDLNLKIFSSYNEDQDRKVPLMISTTGEEESNSSSSSTTDSAARDAFIAFGILKRDDDL 60 61 VPPPPPPPHKETGDLFPVVADARRNIEFSVEDSHWLNLSSLQRNTQKMVKKSRRGPRSRS 120 121 SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYDRAAIKFRGLDADINFVVD 180 181 DYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYKGLALQKCTQFKTHDQIHLFQNRGW 240 241 DAAAIKYNELGKGEGAMKFGAHIKGNGHNDLELSLGISSSSESIKLTTGDYYKGINRSTM 300 301 GLYGKQSSIFLPMATMKPLKTVAASSGFPFISMTSSSSSMSNCFDP |
| Interface Residues: | 127, 129, 130, 131, 132, 136, 138, 140, 143, 145, 147, 219 |
| 3D-footprint Homologues: | 1gcc_A, 5wx9_A, 7wq5_A, 7et4_D |
| Binding Motifs: | MA0553.1 YCTCGTAC |
| Binding Sites: | MA0553.1.1 MA0553.1.10 MA0553.1.11 MA0553.1.12 MA0553.1.13 MA0553.1.14 MA0553.1.15 MA0553.1.16 MA0553.1.17 MA0553.1.18 MA0553.1.19 MA0553.1.2 MA0553.1.20 MA0553.1.3 MA0553.1.4 MA0553.1.5 MA0553.1.6 MA0553.1.7 MA0553.1.8 MA0553.1.9 |
| Publications: | Mathieu J, Yant LJ, Mürdter F, Küttner F, Schmid M. Repression of flowering by the miR172 target SMZ. PLoS Biol : (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.