Transcription Factor
| Accessions: | T095241_1.02 (CISBP 1.02), Q810N8 (JASPAR 2024) |
| Names: | Rhox11, T095241_1.02;, Q810N8_MOUSE, Reproductive homeobox 11, Reproductive homeobox on X chromosome 11 |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q810N8 |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 206 |
| Pfam Domains: | 94-147 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MSRKYFYFDYDYYGMSFCEEEITTEPEEKVAYTSNSGGFADEVTGIPKEGHQSSIGEHSC 60 61 VMPNTQDTGREEPEETSKVAETSEQSLFRIPRKAYRFTPGQLWELQAVFVENQYPDALKR 120 121 KELAGLLNVDEQKIKDWFNNKRAKYRKIQREILGGKNITPTQEELRMKTLVESKKIIIFQ 180 181 EQEGDGLFWEHQNIDTQNSPLSLLFS |
| Interface Residues: | 89, 92, 93, 94, 95, 96, 132, 133, 135, 136, 139, 140, 143, 144, 147, 156 |
| 3D-footprint Homologues: | 2ld5_A, 7psx_B, 2d5v_B, 6m3d_C, 4j19_B, 2lkx_A, 2r5y_A, 1zq3_P, 4xrs_G, 1mnm_C, 6a8r_A, 5zfz_A, 1le8_B, 1k61_B, 5jlw_D, 2xsd_C, 1e3o_C, 1au7_A, 7q3o_C, 1le8_A, 7xrc_C, 1ig7_A, 1du0_A, 5flv_I, 3l1p_A, 1puf_A, 1jgg_B, 5zjt_E, 3a01_E, 2h1k_B, 5hod_A, 3lnq_A, 1puf_B, 4qtr_D, 3cmy_A, 2hdd_A, 1nk2_P, 1fjl_B, 3rkq_B, 6es3_K, 1b72_A, 3d1n_M, 1o4x_A, 4cyc_A, 2hos_A |
| Binding Motifs: | MA0629.1 / PH0157.1 amkmyGCTGTwAwrsrw PH0158.1 arkmcGCTGTwAwgsrw M1046_1.02 wwwwACAbcr MA0629.2 yGCTGTwAw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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