Transcription Factor

Accessions: 5und_A (3D-footprint 20231221)
Names: 11-zinc finger protein, CCCTC-binding factor, CTCF_HUMAN, CTCFL paralog, Transcriptional repressor CTCF
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: P49711
Length: 171
Pfam Domains: 4-26 C2H2-type zinc-finger domain
4-26 C2H2-type zinc finger
19-40 Zinc-finger double domain
32-54 C2H2-type zinc finger
32-54 Zinc finger, C2H2 type
32-55 C2H2-type zinc-finger domain
47-71 Zinc-finger double domain
60-83 C2H2-type zinc finger
90-113 Zinc finger, C2H2 type
90-113 C2H2-type zinc finger
121-142 Zinc finger, C2H2 type
121-142 C2H2-type zinc finger
135-157 Zinc-finger double domain
Sequence:
(in bold interface residues)
1 EKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPY 60
61 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGK 120
121 KCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHT
Interface Residues: 4, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 27, 42, 43, 44, 45, 46, 47, 48, 49, 50, 57, 70, 71, 72, 73, 74, 76, 77, 81, 101, 102, 103, 104, 107, 110, 130, 131, 132, 133, 134, 137, 142, 143, 145, 147, 157, 159, 161, 162, 165, 169
3D-footprint Homologues: 2kmk_A, 7y3l_A, 1tf3_A, 7n5w_A, 1mey_C, 8ssu_A, 1f2i_J, 6ml4_A, 4x9j_A, 6blw_A, 5kkq_D, 1g2f_F, 6u9q_A, 5ei9_F, 1tf6_A, 5kl3_A, 2gli_A, 7ysf_A, 6wmi_A, 8ssq_A, 1ubd_C, 7w1m_H, 5und_A, 4m9v_C, 7eyi_G, 8h9h_G, 2i13_A, 6e94_A, 2lt7_A, 2jpa_A, 8cuc_F, 3uk3_C, 6a57_A, 2wbs_A, 5v3j_F, 8gn3_A, 7txc_E, 1llm_D, 5yj3_D, 5k5i_A, 6jnm_A, 7y3m_I, 1yuj_A, 2drp_D, 5yel_A, 5k5l_F, 3brd_A
Binding Motifs: 5und_A cGCCCCCTGCTGg
5und_AB CCAGCAGGGGGCGcGcCCCCTGCTG
Binding Sites: 5und_C
5und_D
5und_E
5und_F
Publications: Hashimoto H, Wang D, Horton JR, Zhang X, Corces VG, Cheng X. Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol Cell 66:711-720 (2017). [Pubmed]
Related annotations: PaperBLAST

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