Transcription Factor
| Accessions: | ABI3 (Athamap 20091028), Q01593 (JASPAR 2024) |
| Names: | ABI3, B3 domain-containing transcription factor ABI3, Protein ABSCISIC ACID-INSENSITIVE 3, ABI3_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | Athamap 20091028 1, JASPAR 2024 2 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q01593 |
| Length: | 720 |
| Pfam Domains: | 573-668 B3 DNA binding domain |
| Sequence: (in bold interface residues) | 1 MKSLHVAANAGDLAEDCGILGGDADDTVLMDGIDEVGREIWLDDHGGDNNHVHGHQDDDL 60 61 IVHHDPSIFYGDLPTLPDFPCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAASWAI 120 121 LRSDGEDPTPNQNQYASGNCDDSSGALQSTASMEIPLDSSQGFGCGEGGGDCIDMMETFG 180 181 YMDLLDSNEFFDTSAIFSQDDDTQNPNLMDQTLERQEDQVVVPMMENNSGGDMQMMNSSL 240 241 EQDDDLAAVFLEWLKNNKETVSAEDLRKVKIKKATIESAARRLGGGKEAMKQLLKLILEW 300 301 VQTNHLQRRRTTTTTTNLSYQQSFQQDPFQNPNPNNNNLIPPSDQTCFSPSTWVPPPPQQ 360 361 QAFVSDPGFGYMPAPNYPPQPEFLPLLESPPSWPPPPQSGPMPHQQFPMPPTSQYNQFGD 420 421 PTGFNGYNMNPYQYPYVPAGQMRDQRLLRLCSSATKEARKKRMARQRRFLSHHHRHNNNN 480 481 NNNNNNQQNQTQIGETCAAVAPQLNPVATTATGGTWMYWPNVPAVPPQLPPVMETQLPTM 540 541 DRAGSASAMPRQQVVPDRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPE 600 601 LEARDGISLAMEDIGTSRVWNMRYRFWPNNKSRMYLLENTGDFVKTNGLQEGDFIVIYSD 660 661 VKCGKYLIRGVKVRQPSGQKPEAPPSSAATKRQNKSQRNINNNSPSANVVVASPTSQTVK 720 |
| Interface Residues: | 577, 579, 584, 585, 586, 588, 627, 629, 630, 631, 632, 634 |
| 3D-footprint Homologues: | 6j9b_A, 6j9c_D, 7et6_A, 6fas_B |
| Binding Motifs: | ABI3 sksCATGCA MA0564.1 ytGCATGCa MA0564.2 GCATGC |
| Binding Sites: | ABI3_1 ABI3_2 ABI3_3 |
| Publications: | Reidt W, Wohlfarth T, Ellerstrom M, Czihal A, Tewes A, Ezcurra I, Rask L, Baumlein H. 2000. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product. Plant J. 21:401-8. [Pubmed] Sasnauskas G, Manakova E, Lapėnas K, Kauneckaitė K, Siksnys V. DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J 285:4041-4059 (2018). [Pubmed] |
| Related annotations: | PaperBLAST |
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