Transcription Factor
| Accessions: | Q700D2 (JASPAR 2024), T22529 (AthalianaCistrome v4_May2016) |
| Names: | ID1-like zinc finger protein 3, IDD10_ARATH, Protein indeterminate-domain 10, Zinc finger protein JACKDAW, AT5G03150, JKD, T22529; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:C2H2 |
| Length: | 503 |
| Pfam Domains: | 81-104 Zinc-finger double-stranded RNA-binding 82-104 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MQMIPGDPFSISSSMGGFVHQETHLHHLQQQIPDLNPNSNPNPNAKPNSSSAKKKRNQPG 60 61 TPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIK 120 121 KKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKT 180 181 CGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFGNESNV 240 241 MNNPNLPHGFVHRGVHHPDINAAISQFGLGFGHDLSAMHAQGLSEMVQMASTGNHHLFPS 300 301 SSSSLPDFSGHHQFQIPMTSTNPSLTLSSSSTSQQTSASLQHQTLKDSSFSPLFSSSSEN 360 361 KQNKPLSPMSATALLQKAAQMGSTRSNSSTAPSFFAGPTMTSSSATASPPPRSSSPMMIQ 420 421 QQLNNFNTNVLRENHNRAPPPLSGVSTSSVDNNPFQSNRSGLNPAQQMGLTRDFLGVSNE 480 481 HHPHQTGRRPFLPQELARFAPLG |
| Interface Residues: | 45, 93, 94, 95, 96, 98, 99, 101, 102, 109, 115, 117, 118, 119, 120, 123, 138, 139, 142, 143, 144, 145, 147, 148, 169, 170, 171, 172, 173, 175, 176, 196, 197, 198, 199, 200, 202 |
| 3D-footprint Homologues: | 3iay_A, 5v3j_F, 5yel_A, 6u9q_A, 5kkq_D, 1llm_D, 7ysf_A, 6blw_A, 2gli_A, 8cuc_F, 5ei9_F, 2i13_A, 6wmi_A, 6e94_A, 2jpa_A, 2lt7_A, 6ml4_A, 5k5i_A, 1g2f_F, 4x9j_A, 5kl3_A, 1mey_C, 1f2i_J, 1ubd_C, 2kmk_A, 2drp_D, 7eyi_G, 8h9h_G, 7y3m_I, 2wbs_A |
| Binding Motifs: | M0319 / MA1156.1 wwwwtTTTTGTCkTTTTstk MA1156.2 TTTTGTCkTTTT |
| Binding Sites: | MA1156.1.1 MA1156.1.10 MA1156.1.11 MA1156.1.12 MA1156.1.13 MA1156.1.14 MA1156.1.15 MA1156.1.16 MA1156.1.17 MA1156.1.18 MA1156.1.19 MA1156.1.2 MA1156.1.20 MA1156.1.3 MA1156.1.4 MA1156.1.5 MA1156.1.6 MA1156.1.7 MA1156.1.8 MA1156.1.9 MA1156.2.1 MA1156.2.10 MA1156.2.11 MA1156.2.12 MA1156.2.13 MA1156.2.14 MA1156.2.15 MA1156.2.16 MA1156.2.17 MA1156.2.18 MA1156.2.19 MA1156.2.2 MA1156.2.20 MA1156.2.3 MA1156.2.4 MA1156.2.5 MA1156.2.6 MA1156.2.7 MA1156.2.8 MA1156.2.9 |
| Publications: | Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed] |
| Related annotations: | PaperBLAST |
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