Transcription Factor
Accessions: | T105354_1.02 (CISBP 1.02) |
Names: | Ame_R001268, T105354_1.02; |
Organisms: | Ailuropoda melanoleuca |
Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
Notes: | experiment type:PBM, family:Homeodomain,POU |
Length: | 500 |
Pfam Domains: | 315-388 Pou domain - N-terminal to homeobox domain 407-463 Homeobox domain |
Sequence: (in bold interface residues) | 1 MAPTLEILATSVIFKGLYASKIRPAEDRWLQKLGEGGDAAVRRGPALLRQNKAHRGSPRP 60 61 RTEPVTKAGGRRRTPSRRSCGGAGRRPGRSMVGLRRDLDMKWELPHSQKRHHTSTIWGKC 120 121 PNHQPSACQRNYSSGEGSPVHSLIGAPRRLRTHLRGRRSAAGAAGAQDCRLEEQAGGGGH 180 181 RAGAPSARGFPDDGIRELKQRGTPPAQSGCRKLRWRISKERGHDPSPWRCELSLSTPAET 240 241 QTGAGCASAVGALYEPCNVPTGVGCVSRIPYMHTHTSTSTNALFFLLLLQTTAGKKIKHQ 300 301 PQPSATSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI 360 361 CRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGA 420 421 LESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQ 480 481 VGTVSADTPPPHHGLQTSVQ |
Interface Residues: | 340, 356, 357, 358, 359, 361, 362, 368, 372, 405, 407, 408, 409, 410, 448, 449, 451, 452, 455, 456, 459, 460, 463, 469, 472 |
3D-footprint Homologues: | 7u0g_M, 3d1n_M, 3l1p_A, 1o4x_A, 1au7_A, 2xsd_C, 7xrc_C, 8g87_X, 1e3o_C, 3lnq_A, 3cmy_A, 1fjl_B, 2h1k_B, 6a8r_A, 1puf_A, 1ig7_A, 5zfz_A, 1zq3_P, 1jgg_B, 2lkx_A, 1nk2_P, 2ld5_A, 3rkq_B, 2r5y_A, 5hod_A, 1b72_A, 3a01_E, 1puf_B, 5jlw_D, 1le8_A, 7q3o_C, 5flv_I, 1k61_B, 5zjt_E, 4cyc_A, 1mnm_C, 6es3_K, 4xrs_G |
Binding Motifs: | M1246_1.02 ytmATTAwm |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.