Transcription Factor

Accessions: T105354_1.02 (CISBP 1.02)
Names: Ame_R001268, T105354_1.02;
Organisms: Ailuropoda melanoleuca
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain,POU
Length: 500
Pfam Domains: 315-388 Pou domain - N-terminal to homeobox domain
407-463 Homeobox domain
Sequence:
(in bold interface residues)
1 MAPTLEILATSVIFKGLYASKIRPAEDRWLQKLGEGGDAAVRRGPALLRQNKAHRGSPRP 60
61 RTEPVTKAGGRRRTPSRRSCGGAGRRPGRSMVGLRRDLDMKWELPHSQKRHHTSTIWGKC 120
121 PNHQPSACQRNYSSGEGSPVHSLIGAPRRLRTHLRGRRSAAGAAGAQDCRLEEQAGGGGH 180
181 RAGAPSARGFPDDGIRELKQRGTPPAQSGCRKLRWRISKERGHDPSPWRCELSLSTPAET 240
241 QTGAGCASAVGALYEPCNVPTGVGCVSRIPYMHTHTSTSTNALFFLLLLQTTAGKKIKHQ 300
301 PQPSATSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI 360
361 CRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGA 420
421 LESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQ 480
481 VGTVSADTPPPHHGLQTSVQ
Interface Residues: 340, 356, 357, 358, 359, 361, 362, 368, 372, 405, 407, 408, 409, 410, 448, 449, 451, 452, 455, 456, 459, 460, 463, 469, 472
3D-footprint Homologues: 7u0g_M, 3d1n_M, 3l1p_A, 1o4x_A, 1au7_A, 2xsd_C, 7xrc_C, 8g87_X, 1e3o_C, 3lnq_A, 3cmy_A, 1fjl_B, 2h1k_B, 6a8r_A, 1puf_A, 1ig7_A, 5zfz_A, 1zq3_P, 1jgg_B, 2lkx_A, 1nk2_P, 2ld5_A, 3rkq_B, 2r5y_A, 5hod_A, 1b72_A, 3a01_E, 1puf_B, 5jlw_D, 1le8_A, 7q3o_C, 5flv_I, 1k61_B, 5zjt_E, 4cyc_A, 1mnm_C, 6es3_K, 4xrs_G
Binding Motifs: M1246_1.02 ytmATTAwm
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.