Transcription Factor
| Accessions: | T153727_1.02 (CISBP 1.02), Q24040 (JASPAR 2024) |
| Names: | Bgb, T153727_1.02;, BGB_DROME |
| Organisms: | Drosophila melanogaster |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q24040 |
| Notes: | experiment type:B1H |
| Length: | 213 |
| Pfam Domains: | 30-195 Core binding factor beta subunit |
| Sequence: (in bold interface residues) | 1 MMNEAALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTG 60 61 YRERSIEERQVRFMNGCREGHTEASFVASGTNLQLVFNANQNPYLHDKECDFDKEHGKVH 120 121 IKSYFIMNGVCVRFRGWIDLERLDGVGCLEYDERRAMHEDAILRDQIDRYNQRLREFEDT 180 181 KRAYRDNRQDEMEAVRRGVASGGIGVGASMWRR |
| Interface Residues: | 74, 101, 105, 126, 127, 130, 137, 152, 154 |
| 3D-footprint Homologues: | 6ztj_C, 6vu3_A, 6vz3_A |
| Binding Motifs: | MA0242.1 wAACCGCAR M5173_1.02 YTGCGGTTw |
| Binding Sites: | MA0242.1.1 / MA0242.1.16 / MA0242.1.17 / MA0242.1.18 / MA0242.1.2 / MA0242.1.3 / MA0242.1.4 / MA0242.1.5 / MA0242.1.6 MA0242.1.10 / MA0242.1.14 / MA0242.1.15 / MA0242.1.7 / MA0242.1.8 MA0242.1.11 MA0242.1.12 MA0242.1.13 MA0242.1.19 MA0242.1.20 MA0242.1.9 |
| Publications: | Meng X, Brodsky M.H, Wolfe S.A. A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors. Nature biotechnology 23:988-94 (2005). [Pubmed] |
| Related annotations: | PaperBLAST |
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