Transcription Factor
| Accessions: | Q6J9S1 (JASPAR 2024), T21950 (AthalianaCistrome v4_May2016) |
| Names: | Ethylene-responsive transcription factor RAP2-11, Protein RELATED TO APETALA2 11, RA211_ARATH, AT5G19790, RAP2.11, T21950; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 253 |
| Pfam Domains: | 20-70 AP2 domain |
| Sequence: (in bold interface residues) | 1 MEHQTTPKQKTKEKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARA 60 61 YDEAACLLRGSNTRTNFANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKPVSSLTDCNI 120 121 NYISTATSLTTTTTTTTTTAIPLNNVYRPDSSVIGQPETEGLQLPYSWPLVSGFNHQIPL 180 181 AQAGGETHGHLNDHYSTDQHLGLAEIERQISASLYAMNGANSYYDNMNAEYAIFDPTDPI 240 241 WDLPSLSQLFCPT |
| Interface Residues: | 26, 27, 28, 29, 30, 34, 36, 38, 41, 45, 47 |
| 3D-footprint Homologues: | 1gcc_A, 5wx9_A, 7wq5_A, 7et4_D |
| Binding Motifs: | M0078 / MA1266.1 cykycdycGCCGkCk M0019 yyttsGCCGGCwrwk MA1266.2 ycdycGCCGkC |
| Binding Sites: | MA1266.1.1 MA1266.1.10 MA1266.1.11 MA1266.1.12 MA1266.1.13 MA1266.1.14 MA1266.1.15 MA1266.1.16 MA1266.1.17 MA1266.1.18 MA1266.1.19 MA1266.1.2 MA1266.1.20 MA1266.1.3 MA1266.1.4 MA1266.1.5 MA1266.1.6 MA1266.1.7 / MA1266.1.8 MA1266.1.9 MA1266.2.1 MA1266.2.10 MA1266.2.11 MA1266.2.12 MA1266.2.13 MA1266.2.14 MA1266.2.15 MA1266.2.16 MA1266.2.17 MA1266.2.18 MA1266.2.19 MA1266.2.2 MA1266.2.20 MA1266.2.3 MA1266.2.4 MA1266.2.5 MA1266.2.6 MA1266.2.7 / MA1266.2.8 MA1266.2.9 |
| Publications: | Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.