Transcription Factor
| Accessions: | TCP15 (ArabidopsisPBM 20140210), TCP16 (ArabidopsisPBM 20140210), Q9C9L2 (JASPAR 2024), T03084 (AthalianaCistrome v4_May2016) |
| Names: | AtTCP15, TCP15_ARATH, Transcription factor TCP15, At1g69690, T03084; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | TCP, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:TCP |
| Length: | 325 |
| Pfam Domains: | 46-172 TCP family transcription factor |
| Sequence: (in bold interface residues) | 1 MDPDPDHNHRPNFPLQLLDSSTSSSSTSLAIISTTSEPNSEPKKPPPKRTSTKDRHTKVE 60 61 GRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLN 120 121 ISLRSSRSSLSAAHLRTTPSSYYFHSPHQSMTHHLQHQHQVRPKNESHSSSSSSSQLLDH 180 181 NQMGNYLVQSTAGSLPTSQSPATAPFWSSGDNTQNLWAFNINPHHSGVVAGDVYNPNSGG 240 241 SGGGSGVHLMNFAAPIALFSGQPLASGYGGGGGGGGEHSHYGVLAALNAAYRPVAETGNH 300 301 NNNQQNRDGDHHHNHQEDGSTSHHS |
| Interface Residues: | 54, 55, 56, 65, 67 |
| 3D-footprint Homologues: | 7vp2_B, 7vp3_D |
| Binding Motifs: | TCP15 GGGGCCCACm TCP16 TGGGTCCACm MA1062.1 GGGCCCAC M0755 wkGTGGGmCCcAc M0756 wkGTGGGmCCcAy MA1062.2 wwawGTGGGwCCCACwwww MA1062.3 GTGGGwCCCAC |
| Binding Sites: | MA1062.1.1 / MA1062.1.2 MA1062.1.10 MA1062.1.11 MA1062.1.12 MA1062.1.13 MA1062.1.14 / MA1062.1.15 MA1062.1.16 MA1062.1.17 MA1062.1.18 MA1062.1.19 MA1062.1.20 MA1062.1.3 MA1062.1.4 MA1062.1.5 MA1062.1.6 / MA1062.1.7 / MA1062.1.8 MA1062.1.9 MA1062.2.1 / MA1062.2.2 MA1062.2.10 / MA1062.2.9 MA1062.2.10 / MA1062.2.11 MA1062.2.11 / MA1062.2.12 MA1062.2.13 MA1062.2.14 MA1062.2.12 / MA1062.2.15 MA1062.2.13 / MA1062.2.16 MA1062.2.17 MA1062.2.18 MA1062.2.14 / MA1062.2.19 MA1062.2.2 / MA1062.2.3 MA1062.2.20 MA1062.2.3 MA1062.2.4 MA1062.2.4 / MA1062.2.5 MA1062.2.5 / MA1062.2.6 MA1062.2.6 / MA1062.2.7 MA1062.2.7 / MA1062.2.8 MA1062.2.8 / MA1062.2.9 MA1062.2.1 MA1062.2.15 MA1062.2.16 MA1062.2.17 MA1062.2.18 MA1062.2.19 MA1062.2.20 MA1062.3.1 MA1062.3.10 MA1062.3.11 MA1062.3.12 / MA1062.3.5 MA1062.3.13 / MA1062.3.4 MA1062.3.14 MA1062.3.15 MA1062.3.16 MA1062.3.17 MA1062.3.18 MA1062.3.19 MA1062.3.2 MA1062.3.20 MA1062.3.3 MA1062.3.6 MA1062.3.7 MA1062.3.8 MA1062.3.9 |
| Publications: | Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed] Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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