Transcription Factor
| Accessions: | Q17381 (JASPAR 2024) |
| Names: | Ce-fkh-1, Defective pharyngeal development protein 4, Fork head-HNF-3 homolog, PHA4_CAEEL |
| Organisms: | Caenorhabditis elegans |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q17381 |
| Length: | 506 |
| Pfam Domains: | 236-331 Fork head domain |
| Sequence: (in bold interface residues) | 1 MTSPSSDEDIIDIRVIKEEPESEPDSEAEPATTTNSTDSEDSVEQENKKLLETEKNRKRE 60 61 QKHKMLPNGTTSGTSDTGNQVPATSSAASSVDYTAMNAQDYLPTYSNTTLNYQPYQYQTA 120 121 ANGLLNYNNYSQYATANQLGSNYISPANFMQGGGISPLGFTTGTTGATTAAASVATSSAS 180 181 AVIGRSNGRSSSTVAASPADRSYSGVSGGQGQELTIQEFETVTEKIRRHGTYGQSKPPYS 240 241 YISLITMAIQKSNSRQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHSLSFNDCFVKVARS 300 301 PDKPGKGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPSRKKRNANSQQLHQQQHIPKM 360 361 EIKEEDPTSITTTSSLGAYSLIPQISTKKEIKEELKAVQDATAAAANLGLIDPSGTPSAV 420 421 NHSQPTSVISSVGTLGTTQAQMTLNGQYASPYLYSSDFATILPQSQNFLNNTLYNTTSSY 480 481 PGIDYTNGVYQNTLYSSTNPNSAANL |
| Interface Residues: | 276, 279, 281, 282, 283, 285, 286, 287, 289, 290, 299, 306, 331 |
| 3D-footprint Homologues: | 3l2c_A, 7vox_H, 2hdc_A, 7tdx_A, 7yzb_A, 6nce_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 7yzg_A, 7tdw_A, 3g73_A, 7yz7_A, 6el8_A, 3qrf_G |
| Binding Motifs: | MA0546.1 wrwGyAAAyA |
| Binding Sites: | MA0546.1.1 MA0546.1.10 MA0546.1.11 MA0546.1.12 MA0546.1.13 MA0546.1.14 MA0546.1.15 MA0546.1.16 MA0546.1.17 MA0546.1.18 MA0546.1.19 MA0546.1.2 MA0546.1.20 MA0546.1.3 MA0546.1.4 MA0546.1.5 MA0546.1.6 MA0546.1.7 MA0546.1.8 MA0546.1.9 |
| Publications: | Raharjo W.H, Logan B.C, Wen S, Kalb J.M, Gaudet J. In vitro and in vivo characterization of Caenorhabditis elegans PHA-4/FoxA response elements. Developmental dynamics : an official publication of the American Association of Anatomists 239:2219-32 (2010). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.