Transcription Factor
| Accessions: | Q39117 (JASPAR 2024), T06211 (AthalianaCistrome v4_May2016) |
| Names: | TGT2_ARATH, Trihelix DNA-binding protein GT-2, Trihelix transcription factor GT-2, AT1G76890, GT2, T06211; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Trihelix |
| Length: | 575 |
| Pfam Domains: | 40-125 Myb/SANT-like DNA-binding domain 396-483 Myb/SANT-like DNA-binding domain 414-459 Myb/SANT-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSGNSEGLLESSGGGVGGSVEEEKDMKMEETGEGAGSGGNRWPRPETLALLRIRSEMDKA 60 61 FRDSTLKAPLWEEISRKMMELGYKRSSKKCKEKFENVYKYHKRTKEGRTGKSEGKTYRFF 120 121 EELEAFETLSSYQPEPESQPAKSSAVITNAPATSSLIPWISSSNPSTEKSSSPLKHHHQV 180 181 SVQPITTNPTFLAKQPSSTTPFPFYSSNNTTTVSQPPISNDLMNNVSSLNLFSSSTSSST 240 241 ASDEEEDHHQVKSSRKKRKYWKGLFTKLTKELMEKQEKMQKRFLETLEYREKERISREEA 300 301 WRVQEIGRINREHETLIHERSNAAAKDAAIISFLHKISGGQPQQPQQHNHKPSQRKQYQS 360 361 DHSITFESKEPRAVLLDTTIKMGNYDNNHSVSPSSSRWPKTEVEALIRIRKNLEANYQEN 420 421 GTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKRPLDSKTCPYFHQL 480 481 EALYNERNKSGAMPLPLPLMVTPQRQLLLSQETQTEFETDQREKVGDKEDEEEGESEEDE 540 541 YDEEEEGEGDNETSEFEIVLNKTSSPMDINNNLFT |
| Interface Residues: | 444, 447, 448 |
| 3D-footprint Homologues: | 3zqc_A, 3osg_A |
| Binding Motifs: | M0773 / MA1208.1 wtWTTTACygywdt M0776 rcrGTAAAWaw UN0365.1 awGGTAAAAAww MA1208.2 wtWTTTACygy |
| Binding Sites: | MA1208.1.1 MA1208.1.10 MA1208.1.11 MA1208.1.12 MA1208.1.13 MA1208.1.14 MA1208.1.15 MA1208.1.16 MA1208.1.17 MA1208.1.18 MA1208.1.19 MA1208.1.2 MA1208.1.20 MA1208.1.3 MA1208.1.4 MA1208.1.5 MA1208.1.6 MA1208.1.7 MA1208.1.8 MA1208.1.9 MA1208.1.3 / UN0365.1.3 MA1208.1.11 / UN0365.1.15 UN0365.1.18 MA1208.1.13 / UN0365.1.19 MA1208.1.16 MA1208.1.1 / UN0365.1.1 UN0365.1.10 UN0365.1.11 MA1208.1.10 / UN0365.1.12 UN0365.1.13 UN0365.1.14 UN0365.1.16 MA1208.1.12 / UN0365.1.17 MA1208.1.2 / UN0365.1.2 MA1208.1.14 / UN0365.1.20 MA1208.1.4 / UN0365.1.4 UN0365.1.5 MA1208.1.7 / UN0365.1.6 MA1208.1.8 / UN0365.1.7 UN0365.1.8 MA1208.1.9 / UN0365.1.9 MA1208.1.15 MA1208.1.17 MA1208.1.18 MA1208.1.19 MA1208.1.20 MA1208.1.5 MA1208.1.6 MA1208.2.1 MA1208.2.10 MA1208.2.11 / MA1208.2.3 MA1208.2.12 MA1208.2.13 / MA1208.2.19 / MA1208.2.7 MA1208.2.14 MA1208.2.15 MA1208.2.16 MA1208.2.17 MA1208.2.18 MA1208.2.2 MA1208.2.20 MA1208.2.4 MA1208.2.5 MA1208.2.6 MA1208.2.8 MA1208.2.9 |
| Publications: | Marechal E., Hiratsuka K., Delgado J., Nairn A., Qin J., Chait B. T., Chua N. H. Modulation of GT-1 DNA-binding activity by calcium-dependent phosphorylation. Plant Mol. Biol. 40:373-386 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
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