Transcription Factor

Accessions: UP00181A (UniPROBE 20160601)
Names: BarH-like homeobox 1, Barx1, Homeobox protein BarH-like 1
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Uniprot: Q9ER42
Description: BarH-like homeobox 1
Length: 93
Pfam Domains: 17-73 Homeobox domain
Sequence:
(in bold interface residues)
1 LEAAGSGEPGAKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQV 60
61 KTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKK
Interface Residues: 17, 18, 19, 20, 58, 59, 61, 62, 65, 66, 69, 70, 73
3D-footprint Homologues: 2h1k_B, 6a8r_A, 3cmy_A, 1fjl_B, 3d1n_M, 1ig7_A, 5zfz_A, 1puf_A, 3lnq_A, 2lkx_A, 1nk2_P, 1zq3_P, 6m3d_C, 1jgg_B, 2ld5_A, 7psx_B, 5hod_A, 1puf_B, 2hdd_A, 7q3o_C, 5jlw_D, 3rkq_B, 2r5y_A, 6es3_K, 1b72_A, 4xrs_G, 2hos_A, 4cyc_A, 2d5v_B, 5flv_I, 3l1p_A, 3a01_E, 1e3o_C, 1au7_A, 1le8_A, 7xrc_C, 2xsd_C, 1mnm_C, 1k61_B, 4xrm_B, 1o4x_A, 1le8_B, 1du0_A, 8g87_X, 5zjt_E, 4qtr_D
Binding Motifs: UP00181A_1 marsyAATTrsygaaw
Binding Sites: GGTAATTA
AACAATTA
ACCAATTA
ACCCATTA
ACTAATTA
AGCAATTA
AGTAATTA
ATCAATTA
CAATTAGC
CAATTATC
CCATTAGC
CCCATTAA
CTAATTAG
CTAATTGC
GATAATTA
GCAATTAA
GCCCATTA
GCTAATTA
GGCAATTA
GTAATTAC
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.