Transcription Factor
| Accessions: | Abd-B (DrosophilaTF 1.1), P09087 (JASPAR 2024) |
| Names: | ABDB_DROME, Homeobox protein abdominal-B, IAB-7, Infraabdominal 7, P3, PH189 |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1, JASPAR 2024 2 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | P09087 |
| Length: | 493 |
| Pfam Domains: | 388-444 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MQQHHLQQQQQQQQQQEQQHLQEQQQHLQQLHHHAHHHLPQPLHTTSHHHSAHPHLQQQQ 60 61 QQQQHAVVASSPSSVLQQQQQQSTPTTHSTPTHAVMYEDPPPVPLVAVQQQHLPAPQQQQ 120 121 QLQQQQQQQQQQLATTPVAGALSPAQTPTGPSAQQQQHLTSPHHQQLPQQQTPNSVASGA 180 181 SSNLQQQQQQQNAAVAPGQTQIVAPTTASVSPSSVSSQKEDINMSIQLAPLHIPAIRAGP 240 241 GFETDTSAAVKRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNYRP 300 301 DQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGA 360 361 SGGLSVGAVGPCTPNPGLHEWTGQVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWEL 420 421 ARNLQLTERQVKIWFQNRRMKNKKNSQRQANQQNNNNNSSSNHNHAQATQQHHSGHHLNL 480 481 SLNMGHHAAKMHQ |
| Interface Residues: | 388, 389, 390, 391, 394, 429, 430, 432, 433, 436, 437, 440, 441, 444 |
| 3D-footprint Homologues: | 1puf_A, 3cmy_A, 5zfz_A, 1fjl_B, 1ig7_A, 6a8r_A, 2h1k_B, 3lnq_A, 2lkx_A, 1jgg_B, 6m3d_C, 1nk2_P, 1zq3_P, 6es3_K, 2ld5_A, 7q3o_C, 4xrs_G, 2hdd_A, 3rkq_B, 2r5y_A, 1puf_B, 1au7_A, 5flv_I, 3d1n_M, 2hos_A, 5zjt_E, 4cyc_A, 7psx_B, 1b72_A, 3l1p_A, 3a01_E, 5jlw_D, 7xrc_C, 1e3o_C, 2xsd_C, 1le8_A, 1mnm_C, 1k61_B, 8g87_X, 5hod_A, 1o4x_A, 4qtr_D, 1le8_B, 1du0_A |
| Binding Motifs: | MA0165.1 TTTATka Abd-B rsvTTtATGgCsvs |
| Binding Sites: | MA0165.1.1 MA0165.1.10 MA0165.1.11 MA0165.1.12 MA0165.1.13 MA0165.1.14 MA0165.1.15 MA0165.1.16 MA0165.1.17 MA0165.1.18 / MA0165.1.19 MA0165.1.2 MA0165.1.20 MA0165.1.3 MA0165.1.4 MA0165.1.5 MA0165.1.6 MA0165.1.7 MA0165.1.8 MA0165.1.9 |
| Publications: | Ekker S. C., Jackson D. G., von Kessler D. P., Sun B. I., Young K. E., Beachy P. A. The degree of variation in DNA sequence recognition among four Drosophila homeotic proteins. EMBO J. 13:3551-3560 (1994). [Pubmed] Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.