Transcription Factor

Accessions: ECK120004911 (RegulonDB 7.5)
Names: HipB
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Notes: sequence-specific DNA binding; cytoplasm; Transcription related; repressor; transcription, DNA-dependent; transcription repressor activity
Length: 89
Pfam Domains: 12-65 Helix-turn-helix domain
13-67 Helix-turn-helix domain
16-67 Helix-turn-helix domain
18-69 Helix-turn-helix
22-67 Cro/C1-type HTH DNA-binding domain
Sequence:
(in bold interface residues)
1 MMSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKI 60
61 LQSLELSMTLCDAKNASPESTEQQNLEW*
Interface Residues: 28, 29, 38, 39, 40, 41, 43, 44, 47, 50, 51
3D-footprint Homologues: 3oqm_C, 1per_L, 3cro_R, 3dnv_B, 4z5h_A, 3zkc_A, 5k98_B, 4lln_I, 5gpc_B
Binding Motifs: HipB TATCCbbKWdhGMGGATAA
Binding Sites: ECK125135151
ECK125135153
ECK125135155
ECK125135157
Related annotations: PaperBLAST

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