Transcription Factor
Accessions: | P10734 (JASPAR 2024) |
Names: | KNIR_DROME, Nuclear receptor subfamily 0 group A member 1, Zygotic gap protein knirps |
Organisms: | Drosophila melanogaster |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Length: | 429 |
Pfam Domains: | 3-73 Zinc finger, C4 type (two domains) |
Sequence: (in bold interface residues) | 1 MNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNISTISECKNEGKCIIDKKNRTTCKA 60 61 CRLRKCYNVGMSKGGSRYGRRSNWFKIHCLLQEHEQAAAAAGKAPPLAGGVSVGGAPSAS 120 121 SPVGSPHTPGFGDMAAHLHHHHQQQQQQQVPRHPHMPLLGYPSYLSDPSAALPFFSMMGG 180 181 VPHQSPFQLPPHLLFPGYHASAAAAAASAADAAYRQEMYKHRQSVDSVESQNRFSPASQP 240 241 PVVQPTSSARQSPIDVCLEEDVHSVHSHQSSASLLHPIAIRATPTTPTSSSPLSFAAKMQ 300 301 SLSPVSVCSIGGETTSVVPVHPPTVSAQEGPMDLSMKTSRSSVHSFNDSGSEDQEVEVAP 360 361 RRKFYQLEAECLTTSSSSSSHSAAHSPNTTTAHAEVKRQKLGGAEATHFGGFAVAHNAAS 420 421 AMRGIFVCV |
Interface Residues: | 13, 14, 16, 17, 23, 24, 26, 27, 30, 31, 56, 78, 81 |
3D-footprint Homologues: | 6fbq_A, 7wnh_D, 6l6q_B, 3g9m_B, 1a6y_A, 1lo1_A, 4oln_B, 2han_B, 1kb2_B, 2a66_A, 2nll_B, 1lat_A, 7xv6_B, 2ff0_A, 1dsz_A, 4umm_E, 3cbb_A, 8cef_H, 4iqr_B, 2han_A, 1hcq_E, 8hbm_B, 5krb_G, 5cbz_E, 4tnt_B, 5e69_A, 4hn5_B, 5emc_A, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A |
Binding Motifs: | MA0451.1 AAwcTAGrGCAs MA0451.2 AAwcTAGrGCA |
Binding Sites: | MA0451.1.1 MA0451.1.10 MA0451.1.11 MA0451.1.12 MA0451.1.13 MA0451.1.14 MA0451.1.15 MA0451.1.16 MA0451.1.17 MA0451.1.18 MA0451.1.19 MA0451.1.2 MA0451.1.20 MA0451.1.3 MA0451.1.4 MA0451.1.5 MA0451.1.6 MA0451.1.7 MA0451.1.8 MA0451.1.9 MA0451.2.1 / MA0451.2.3 MA0451.2.10 MA0451.2.11 MA0451.2.12 MA0451.2.13 MA0451.2.14 MA0451.2.15 MA0451.2.16 / MA0451.2.19 MA0451.2.17 MA0451.2.18 MA0451.2.2 / MA0451.2.6 MA0451.2.20 MA0451.2.4 MA0451.2.5 MA0451.2.7 MA0451.2.8 MA0451.2.9 |
Publications: | Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.