Transcription Factor
| Accessions: | VRN1 (EEADannot 2023-12-22) |
| Names: | BM5A, HvBM5A, Vernalization1, VRN-H1, VRN1 |
| Organisms: | Hordeum vulgare cv Strider |
| Libraries: | EEADannot 2023-12-22 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:MADS-box |
| Length: | 244 |
| Pfam Domains: | 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain) 78-173 K-box region |
| Sequence: (in bold interface residues) | 1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIIFSTKGKLYEFSTE 60 61 SCMDKILERYERYSYAEKVLVSSESEIQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESL 120 121 NLKELQQLEQQLESSLKHIRARKNQLMHESISELQKKERSLQEENKVLQKELVEKQKAQA 180 181 AQQDQTQPQTSSSSSSFMMRDAPPVADTSNHPAAAGERAEDVAVQPQVPLRTALPLWMVS 240 241 HING |
| Interface Residues: | 3, 4, 15, 18, 19, 23, 159, 163 |
| 3D-footprint Homologues: | 1hbx_A, 1n6j_A, 1c7u_A, 7x1n_C, 1mnm_A, 7x5e_E |
| Binding Motifs: | EEAD0006 CCarAAAwGG |
| Related annotations: | PaperBLAST |
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