Transcription Factor
| Accessions: | T100212_1.02 (CISBP 1.02), Q04116 (JASPAR 2024) |
| Names: | T100212_1.02;, YHP1, YHP1_YEAST |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 353 |
| Pfam Domains: | 174-230 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MESRNTVLPSLPNIITGTSNSPFQLHTLPNTNFPSDDQGDIRLPPLAASAHIVRPVVNIY 60 61 KSPCDEERPKRKSPQAVDFLSQRVTTSMTPLSKPKKLSSHSPFTPTVRVCSKEQPPQSMH 120 121 SYKKVNILTPLSAAKAVLTPTTRKEKKRSFAFITHSQETFPKKEPKIDNARLARRKRRRT 180 181 SSYELGILQTAFDECPTPNKAKRIELSEQCNMSEKSVQIWFQNKRQAAKKHKNSGNTSHC 240 241 KVHSNDSMSMISYSDAALEITSTPTSTKEAITAELLKTSPANTSSIFEDHHITPCKPGGQ 300 301 LKFHRKSVLVKRTLSNTGHSEIIKSPKGKENRLKFNAYERKPLGEVDLNSFKN |
| Interface Residues: | 174, 175, 176, 177, 178, 179, 180, 215, 216, 218, 219, 222, 223, 226, 227, 229, 230 |
| 3D-footprint Homologues: | 2h1k_B, 6a8r_A, 3cmy_A, 1fjl_B, 5zfz_A, 4j19_B, 1jgg_B, 3lnq_A, 2lkx_A, 1zq3_P, 1nk2_P, 2ld5_A, 5hod_A, 5jlw_D, 3rkq_B, 1puf_B, 4xrs_G, 3d1n_M, 1b72_A, 4cyc_A, 5zjt_E, 1au7_A, 3l1p_A, 1e3o_C, 1le8_A, 7q3o_C, 7xrc_C, 2xsd_C, 1ig7_A, 7psx_B, 1puf_A, 4qtr_D, 2hdd_A, 2r5y_A, 6es3_K, 6m3d_C, 5flv_I, 1o4x_A, 8g87_X, 1du0_A, 3a01_E, 2hos_A |
| Binding Motifs: | M1135_1.02 ayyaATwwa MA0426.1 TAATTG |
| Publications: | MacIsaac K.D, Wang T, Gordon D.B, Gifford D.K, Stormo G.D, Fraenkel E. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC bioinformatics 7:113 (2006). [Pubmed] |
| Related annotations: | PaperBLAST |
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