Transcription Factor

						

			
Accessions: T107917_1.02 (CISBP 1.02)

			
Names: AAH82862, T107917_1.02;
Organisms: Xenopus laevis
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:IRF
Length: 517
Pfam Domains:     7-115 Interferon regulatory factor transcription factor
  267-448 Interferon-regulatory factor 3
Sequence: 
(in bold interface residues)		   1 MNSHHRRVRLKPWLVAQVDSGQYPGLHWEDQDRKVFRIPWRHATRHIPIQEDENTVFKAW   60
  61 AKETGKYQEGVDEPDPAKWKANLRCALNKSREFNLLYDGTKETPVQPFKIYQLCDLPGQN  120
 121 EEPIGGDDIGGDDEEEIGARFPMLHISDSLCPPVQDSLPPFIWPKAEPNFPSSCSNHNFP  180
 181 GPRDIVQHNRTAQTTAITPVPTGAYSEVDMSPQSLVSQSTVLPLPELVPGSGLEPSSDVE  240
 241 LSVQGGIPPIHQGIPDLLISPQMLPLTDLEIKFLYRGKQAGAMTVSNPHGCRLFYSNLEP  300
 301 TPEQVELFGPTSLEQVRFPGTEGIGNEKQKFYTNHLLDVMDRGLILCLQGQDIYAIRLCQ  360
 361 CKVFWSGPCAGYTDRPNPIEREKRIKLFSLETFLNELIACQKGHTSSLPPYEIFFCFGEE  420
 421 WPDRKPKEKKLITVQVIPVAARLLSEIFTGESSWSADSIRLQISHPDLKDKMVEQFKELH  480
 481 QLWQSQQAPAVAQVEAIPNPECDVGSGPWPMHTGNME
Interface Residues: 42, 44, 77, 81, 82, 84, 85, 88, 89
3D-footprint Homologues: 2pi0_B, 1if1_B, 2o61_A, 2irf_L, 7oot_B
Binding Motifs: M1273_1.02 rccGAaACyr
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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