Transcription Factor
| Accessions: | T116956_1.02 (CISBP 1.02), Q8W1W6 (JASPAR 2024), T26401 (AthalianaCistrome v4_May2016) |
| Names: | MYB33, T116956_1.02;, AtMYB33, Myb-related protein 33, MYB33_ARATH, Transcription factor MYB33, AT5G06100, T26401; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: DAP-seq, family:MYB |
| Length: | 520 |
| Pfam Domains: | 34-81 Myb-like DNA-binding domain 37-97 Myb-like DNA-binding domain 87-130 Myb-like DNA-binding domain 90-135 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSYTSTDSDHNESPAADDNGSDCRSRWDGHALKKGPWSSAEDDILIDYVNKHGEGNWNAV 60 61 QKHTSLFRCGKSCRLRWANHLRPNLKKGAFSQEEEQLIVELHAKMGNRWARMAAHLPGRT 120 121 DNEIKNYWNTRIKRRQRAGLPLYPPEMHVEALEWSQEYAKSRVMGEDRRHQDFLQLGSCE 180 181 SNVFFDTLNFTDMVPGTFDLADMTAYKNMGNCASSPRYENFMTPTIPSSKRLWESELLYP 240 241 GCSSTIKQEFSSPEQFRNTSPQTISKTCSFSVPCDVEHPLYGNRHSPVMIPDSHTPTDGI 300 301 VPYSKPLYGAVKLELPSFQYSETTFDQWKKSSSPPHSDLLDPFDTYIQSPPPPTGGEESD 360 361 LYSNFDTGLLDMLLLEAKIRNNSTKNNLYRSCASTIPSADLGQVTVSQTKSEEFDNSLKS 420 421 FLVHSEMSTQNADETPPRQREKKRKPLLDITRPDVLLASSWLDHGLGIVKETGSMSDALA 480 481 VLLGDDIGNDYMNMSVGASSGVGSCSWSNMPPVCQMTELP |
| Interface Residues: | 34, 69, 70, 71, 72, 74, 75, 79, 80, 121, 122, 125, 126, 129, 130, 131 |
| 3D-footprint Homologues: | 1w0t_A, 3osg_A, 1vfc_A, 2kdz_A, 7xur_A, 6kks_A, 1mse_C, 3zqc_A |
| Binding Motifs: | M1338_1.02 wwrdyvGTTa M0494 / MA1391.1 aTAACyGwmwh MA1391.2 wwaTAACCGTaww MA1391.3 aTAACCGTaw |
| Binding Sites: | MA1391.1.1 MA1391.1.3 MA1391.1.10 MA1391.1.11 MA1391.1.12 MA1391.1.13 MA1391.1.14 MA1391.1.15 MA1391.1.16 MA1391.1.17 MA1391.1.18 MA1391.1.19 MA1391.1.2 MA1391.1.20 MA1391.1.4 MA1391.1.5 MA1391.1.6 MA1391.1.7 MA1391.1.8 MA1391.1.9 MA1391.2.1 MA1391.2.10 / MA1391.2.6 MA1391.2.11 / MA1391.2.7 MA1391.2.12 MA1391.2.13 / MA1391.2.8 MA1391.2.14 MA1391.2.15 MA1391.2.16 MA1391.2.17 MA1391.2.18 MA1391.2.19 / MA1391.2.9 MA1391.2.2 MA1391.2.20 MA1391.2.3 MA1391.2.4 MA1391.2.5 MA1391.2.3 / MA1391.2.6 MA1391.2.7 MA1391.2.5 / MA1391.2.8 MA1391.2.9 MA1391.2.10 MA1391.2.11 MA1391.2.12 MA1391.2.13 MA1391.2.14 MA1391.2.15 MA1391.2.16 MA1391.2.17 MA1391.2.18 MA1391.2.19 MA1391.2.20 MA1391.2.4 MA1391.3.1 MA1391.3.10 MA1391.3.11 MA1391.3.12 MA1391.3.13 MA1391.3.14 MA1391.3.15 MA1391.3.16 MA1391.3.17 MA1391.3.18 MA1391.3.19 MA1391.3.2 MA1391.3.20 MA1391.3.3 MA1391.3.4 MA1391.3.5 MA1391.3.6 MA1391.3.7 MA1391.3.8 MA1391.3.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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